Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3881 ATGGTCGTCGTTTCAGGATTCCTTCGTCGTACACCGAAACCACGCCTTTGGTGGAGGCCCATTCACCACCACGCATCATTCCACCAACCGCCGCTGCATAAACTGCCGCCAACCTTCTACCTCGCTCGGATGTGCCAAAACGCAGATACTCTCAAGAAGCTCCACGCGACCCTCATAGTCCACGGCCTGTGCGGCGGCGCTGACCAACTCCTCTCCGCCACAAAGCTTCTCAGCCTGTACGGCTCTTTCGGCTTGGTTGGCTCCGCCCGCCGCCTCTTCGACCAGCTCCCTTCACCTGACTTGTACTCCTTCAAGGTCATGATCCGTTGGTACTTCCTAAACGACATGCATTCCGACGTCGTTTCAATCTACGACCTTGCCAGAGTAACACTCGGTGCCTTAAACGAAGACGTCGTCTTCTCCGTCGTACTCAAAGCCTGCCGCGAGCTCCGCGACGCCGTTTCGGGGAAGCGGCTCCACTGCCACGTCATCAAGGCCAGCTATCCCGACAGCTTCGTCCTCACGTGCCTCGTCGACGTGTACTCCAAGTGCGGCCTTGTCGATAGTGCACGCCACGTGTTCGACGAAATATCCGAACGAAATGTGGTGTCATGGACCGCGATGATCGTTGCTTACGTGCAAAACGAGTGTGCCGGAGAAGGGTTGACGCTTTTTAACAAGATGAGGGAATGTTTTATGTCTGGGAATGAGTTCACTGTTGTGAGTTTGGTGAATGCGTGCACAAAGTTGGGATCTTTGCATCAAGGGAAGTGGGTTCATGGGTATGTGATTAAGAGTGGGATTGAGGTTAATTCGTTCTTGGCAAGTTCTCTTTTGGATATGTATGTCAAATGTGGTGACTTGAGGGATGCACAGAAGGTGTTTGATGATGTTTTAGCCGTTGATGTTGTTTCATGGACTGCTATGATTGTGGGGTATGCCCAAAGGGATCACCCTAACATGGCATTGGAGTTGTTCAGTAGTAAGAGATGGGAAGGACTCTTGCCGAATTCCGTTACCCTTTCGAGTGTGCTCTCTGCTTGTGCTCAGATTGGGGATTCCCTTTTGGGAAGGTCACTTCATGTTCTTGCGGTTAAGCTTGGGTGTGACGATGATCATGCTGCGAGGAATGCTCTTATTGATGTATATGCCAAGTGTGGTGCCATGTCGGATGCTCGATGTGTGTTTGAAACCATCCTTGATAAGGATGTTGTCTCTTGGAATTCGATTGTTTCCGGTAGTGCTCAGTGTGGTTGTGCTTATGAAGCTCTTGAGCTGTTTCAAAGGATGAGGTTGGAGTCATTTTCCCCTGATGCGGTTACAATTGTTGGTGTTTTTTCGGCTTGTTCTTCCCTTGGTGCCCTCCAATTTGGTTCCTCTGTTCATGCTTTTTCCTTCAAGTGTGGTCTCATGTCGTCCAGCGTCTATGTTGGCACTGCACTCCTCAATTTCTATTCAAAATGCGGCGATGCAAGATCGGCTCGCATGGTGTTCGATGGCATGGAGGAGAAGAATGCTGTGACATGGGGTGCAATGATTGGTGGATACGGCATGCAAGGCGATGGCAGTGGATCTCTTGCTCTATTTAAGGATATGTTGAGAGAAGAATTTGAGCCTAATGATGTGTTGTTCACAACTATATTAGCAGCTTGTAGCCATTCAGGGATGGTTGGAGAAGGCTCAAGGCTGTTTGATATGATGTGTGGTGAATTGAACTTTGTTCCTTCCATGAAGCATTACGCGTGCATGGTTGATCTTTTGGCGCGTTCCGGCAACCTTGATGAAGCATTAGACTTCATGGACAAGATGCCAGTTCAGCCTAGCGTTGGTGTGTTTGGAGCTTTTCTCCATGGTTGTGGACTCCATTCGAGGTTTGACTTAGGAGAGGTTGCAATCAGGAGAATGCTGGAATTGCACCCTGATGAAGCTTGTTACTATGTCCTTGTGTCAAACCTGTATGCTTCAGATGGAAGATGGGGCATGGTTAAGGAGGTAAGAGAGATGATAAAGCAAAGTGGATTGAGCAAGGTCCCGGGTTGTAGTTCAGTGAAAATTGGTATTAACAATCATCAATATGCTAAAGTAGCAGCTATTGCTTAG 2100 0.4886 MVVVSGFLRRTPKPRLWWRPIHHHASFHQPPLHKLPPTFYLARMCQNADTLKKLHATLIVHGLCGGADQLLSATKLLSLYGSFGLVGSARRLFDQLPSPDLYSFKVMIRWYFLNDMHSDVVSIYDLARVTLGALNEDVVFSVVLKACRELRDAVSGKRLHCHVIKASYPDSFVLTCLVDVYSKCGLVDSARHVFDEISERNVVSWTAMIVAYVQNECAGEGLTLFNKMRECFMSGNEFTVVSLVNACTKLGSLHQGKWVHGYVIKSGIEVNSFLASSLLDMYVKCGDLRDAQKVFDDVLAVDVVSWTAMIVGYAQRDHPNMALELFSSKRWEGLLPNSVTLSSVLSACAQIGDSLLGRSLHVLAVKLGCDDDHAARNALIDVYAKCGAMSDARCVFETILDKDVVSWNSIVSGSAQCGCAYEALELFQRMRLESFSPDAVTIVGVFSACSSLGALQFGSSVHAFSFKCGLMSSSVYVGTALLNFYSKCGDARSARMVFDGMEEKNAVTWGAMIGGYGMQGDGSGSLALFKDMLREEFEPNDVLFTTILAACSHSGMVGEGSRLFDMMCGELNFVPSMKHYACMVDLLARSGNLDEALDFMDKMPVQPSVGVFGAFLHGCGLHSRFDLGEVAIRRMLELHPDEACYYVLVSNLYASDGRWGMVKEVREMIKQSGLSKVPGCSSVKIGINNHQYAKVAAIA* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3881 699 TIGRFAM PPR: pentatricopeptide repeat domain 203 233 IPR002885 -
Ahy13g3881 699 TIGRFAM PPR: pentatricopeptide repeat domain 174 203 IPR002885 -
Ahy13g3881 699 TIGRFAM PPR: pentatricopeptide repeat domain 507 540 IPR002885 -
Ahy13g3881 699 TIGRFAM PPR: pentatricopeptide repeat domain 580 603 IPR002885 -
Ahy13g3881 699 TIGRFAM PPR: pentatricopeptide repeat domain 542 576 IPR002885 -
Ahy13g3881 699 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat family 302 349 IPR002885 -
Ahy13g3881 699 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 56 695 - -
Ahy13g3881 699 Gene3D Tetratricopeptide repeat domain 258 357 IPR011990 GO:0005515
Ahy13g3881 699 Gene3D Tetratricopeptide repeat domain 68 159 IPR011990 GO:0005515
Ahy13g3881 699 Gene3D Tetratricopeptide repeat domain 464 559 IPR011990 GO:0005515
Ahy13g3881 699 Gene3D Tetratricopeptide repeat domain 160 257 IPR011990 GO:0005515
Ahy13g3881 699 Gene3D Tetratricopeptide repeat domain 358 463 IPR011990 GO:0005515
Ahy13g3881 699 Pfam PPR repeat 479 505 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 507 535 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 405 432 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 203 230 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 377 402 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 542 568 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 276 297 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 580 603 IPR002885 -
Ahy13g3881 699 Pfam PPR repeat 174 202 IPR002885 -
Ahy13g3881 699 PANTHER OS07G0578800 PROTEIN-RELATED 56 695 IPR045215 GO:0003723|GO:0009451
Ahy13g3881 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Ahy13g3881 699 Gene3D Tetratricopeptide repeat domain 560 694 IPR011990 GO:0005515
Ahy13g3881 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Ahy13g3881 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Ahy13g3881 699 Pfam E motif 622 683 IPR046848 -
Ahy13g3881 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3881 Ahy-Chr13 138279298 138281835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3881 52 692 Glycoside Hydrolase AT3G49170 33.282 1.51e-108 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3881 - - lang:109330587 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3881 13 138279298 138281835 Ahy13g3881 13 138279298 138281835 ECH
Ahy13g3881 13 138279298 138281835 Ahy5g1547 5 41088646 41095413 hybridization
Ahy13g3881 13 138279298 138281835 Ahy13g2740 13 102819338 102824441 PCT
Ahy13g3881 13 138279298 138281835 Ahy3g2415 3 101439855 101446383 PCT