Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3873 ATGCACCAACAAGCCACATACCAACCATTTTTGAATGGGAATATGGTGAATAAAAGAAAAGAGAGGGAAGGTGAAGAAGGAGTGGGAACTAAGAACAATGAAGAATTGAGCAATGAATGGGAGCAGATAAGGGAGGAGGCTGCATCAGTGGCAGCTGCACTACTTGGGGCAAGAAGAGCAAAGAAGCGCTACATTGGCGTGCGCCAACGTCCTTCAGGGCGATGGGTGGCTGAGATCAAAGACACCATACAGAATATTAGGCTGTGGTTAGGCACCTACGACACTGCCGAAGATGCTGCTAGAGCTTATGATGAGGCTGCTCGCTTGCTTCGCGGCGCTAATACCCGCACTAATTTCTTTCCATCACAAGATCCTAATTCTGTTCCAGCTCTTCCTCCAAAGATCGCGAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAGCATTTCCTCTTCTTGCATGGTTACTACTTTTCCTAGTAATCATTTTGAGCAAGAAAAAAAGGCCGAACCAGAACCAGAACCAGAGCTAGAACTAGAACCAAAACCAGAACCACTTTTTTCTAAACTAATAGAAGAACAAACATACCAATTAGAAAATTTTCTAGATATTGAGGGATATGGGGCTGTTGGAGAGAATTATGATGGTGCTAGTTATGGTTCCGCTGCCACAACTAGTTGTGACTGTAGTACCATTACTTGTGACTATGGTGGAACTAACAATGTAGCAAATTTTGACCAAGAGGTTTGCATGGAGAATTTCAAGATGGAGGATGGTTGTGCTAACAATGTTGATGATGGAAGAAATAATCAAATTGTTAGGCCTAAAGGAGAATTTGAAGACTGCAATGCTGGTTTCATAGACTTCCACTTTTTGGACACTGTTGGATCATTGGTTTGCTCTTCTTCTCCTTTTGAAATAACTGAGGAAATGGTAGGGCCAATGGTGGAAGAGAATTATGATGTGGATGATTCACCATTGCTTAGGATGAAGTATGAAAGAAAATTCTCAGCATGTCTTTATACATTCATTGGTGTTGGTGAGTGTTTGAAGCTGCAAGATCGACCTGAATAG 1071 0.423 MHQQATYQPFLNGNMVNKRKEREGEEGVGTKNNEELSNEWEQIREEAASVAAALLGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQDPNSVPALPPKIAKLLLLRLKARSISSSCMVTTFPSNHFEQEKKAEPEPEPELELEPKPEPLFSKLIEEQTYQLENFLDIEGYGAVGENYDGASYGSAATTSCDCSTITCDYGGTNNVANFDQEVCMENFKMEDGCANNVDDGRNNQIVRPKGEFEDCNAGFIDFHFLDTVGSLVCSSSPFEITEEMVGPMVEENYDVDDSPLLRMKYERKFSACLYTFIGVGECLKLQDRPE* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3873 356 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Ahy13g3873 356 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Ahy13g3873 356 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Ahy13g3873 356 SUPERFAMILY DNA-binding domain 63 120 IPR016177 GO:0003677
Ahy13g3873 356 MobiDBLite consensus disorder prediction 1 36 - -
Ahy13g3873 356 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 15 355 - -
Ahy13g3873 356 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Ahy13g3873 356 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 355 - -
Ahy13g3873 356 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Ahy13g3873 356 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Ahy13g3873 356 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Ahy13g3873 356 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3873 Ahy-Chr13 138199983 138201053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3873 61 122 AP2-EREBP Transcription Factor Family AT5G19790 73.846 4.28e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy13g3873 AP2 4.90E-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3873 13 138199983 138201053 Ahy3g3602 3 135328785 135329813 hybridization