Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3862 ATGGGCAGGTCACCATGCTGTGAGAAGGTTGGGTTGAAGAAAGGGCCCTGGACTCCCGAAGAAGACCAAAAGCTCATGTCCTATATTGAAAAACACGGCCATGGAAGCTGGCGTGCTTTGCCTTCCAAAGCTGGACTCCAAAGATGTGGAAAGAGTTGTCGACTCAGGTGGACTAACTACCTCCGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAGCTTCATGCCCTTCTTGGAAACAGATGGTCAGCAATAGCGGCTCAGCTTCCCAAGAGGACGGACAACGAGATCAAAAACTACTGGAACACGCACCTAAAGAAGAGGCTAACAAGAATGGGAATAGATCCCACAACCCACAAGCCCAAAACTGATCCCATCGGCGCTGGCTCAGACACCAACTCTTCGCAATCGAAGGACTTAGCGAATCTGAGCCACATGGCGCAGTGGGAGAACGCTCGTCTTGAAGCGGAAGCCAGGTTGGTGAGAGAGTCGAAGCTTCTTCTTCAGGTCCAGCAGACACAACAAACAAACACAACACAACCTCCTCCGGCGCGCCTCGTCCTTAACAAGATCACGGCTGCTCAACAACAGCCCTTGCTTCCGCCCTGCCTTGACGTGCTCAAGGCGTGGCAGAACTCATGGTCTTCCAAGCCGCAACTGTCCGTACCATCAAGGGAAAATTTCAAGATGCATAGTATGTATGCCATGATGCTCTCCACTGATGAGAATCTTGAATCTCCAACTTCCACCTTGTGCTTTCCCGGAGGCGCAAGTGGAAGTAGCGCCATGCTTCCTATCATGTCCTCCACAACCACCTCCGCCACTACTATCACAGTAGATGCTCTCAACGAAAACTTACTTAATCCTTCTCTCACCAAAACTAAGATTGATAGCAACGGCACCATGGTAACCCCATGTGACGAAGGAGTGTTCATTACGAAAGGAGGTAATAATAATGAAACTGACTCATCATGGTACATGTTGAAACAGAACAACCCTGAAATAGAACTTGATGACGATGAAATAGTGGAAAATAATAATAACAACAATAATAACAGCTTCAGAGATGACGACATCATGGTGGCAGTGGAAGCATTCAGAGGAAGAGGCGGAGGGGGTTACGACGGTGTTAATGTTGTCCCACCAACACTGTCCTCAACCGGCGATGTTGTGGTCATGGAAGCAGGACTCATATGCAGTAGCAATAACAACAACGGTGATGATGATGCCCACATGCCTTACCATTCCAACGACACCTTGGCAATCATCAATGATGGTGATGGAAGCATATGTAACGTCAGCCTCGAAGAGAATAAGCATTATTGGAACACCATACTTAACTTGGTCAATGATGCTCAAGTCATGTTCTAA 1392 0.4763 MGRSPCCEKVGLKKGPWTPEEDQKLMSYIEKHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDPIGAGSDTNSSQSKDLANLSHMAQWENARLEAEARLVRESKLLLQVQQTQQTNTTQPPPARLVLNKITAAQQQPLLPPCLDVLKAWQNSWSSKPQLSVPSRENFKMHSMYAMMLSTDENLESPTSTLCFPGGASGSSAMLPIMSSTTTSATTITVDALNENLLNPSLTKTKIDSNGTMVTPCDEGVFITKGGNNNETDSSWYMLKQNNPEIELDDDEIVENNNNNNNNSFRDDDIMVAVEAFRGRGGGGYDGVNVVPPTLSSTGDVVVMEAGLICSSNNNNGDDDAHMPYHSNDTLAIINDGDGSICNVSLEENKHYWNTILNLVNDAQVMF* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3862 463 CDD SANT 69 112 IPR001005 -
Ahy13g3862 463 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 459 - -
Ahy13g3862 463 CDD SANT 16 61 IPR001005 -
Ahy13g3862 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy13g3862 463 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy13g3862 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy13g3862 463 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy13g3862 463 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy13g3862 463 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 459 - -
Ahy13g3862 463 MobiDBLite consensus disorder prediction 118 146 - -
Ahy13g3862 463 SMART sant 66 114 IPR001005 -
Ahy13g3862 463 SMART sant 13 63 IPR001005 -
Ahy13g3862 463 Gene3D - 69 116 - -
Ahy13g3862 463 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy13g3862 463 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy13g3862 463 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3862 Ahy-Chr13 138086069 138088111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3862 1 260 MYB Transcription Factor Family AT3G01140 62.692 6.04e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy13g3862 Myb_DNA-binding 2.30E-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3862 13 138086069 138088111 Ahy13g3862 13 138086069 138088111 ECH
Ahy13g3862 13 138086069 138088111 Ahy20g2570 20 134350938 134354806 ECH
Ahy13g3862 13 138086069 138088111 Ahy3g3591 3 135236287 135238287 hybridization