Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3860 ATGGCGGAAGAGGAGTACATTCAGCAACTGAGGTCCAAAGCAGCAGAGCTTTTCCTCAGAGAAGAATGGAATGACTCCATTGACGTCTACTCCAACCTCATCTCTCACTGCACCCACCACCAACAACAACTCTCTCTTCATCATCCAAATCACCTCCAAAAGCTTCACAAATCACTCTGCATTGCCCTCTGCAACCGCGCCGAAGCCAGGTCTCGCCTTCGCGACTTCCATTGCGCCTTGCAAGACTGCGATCGCGCATTGCAGATCGATGCATCGCATTTCAAGACCCTGCTATGCAAAGGTAAGATCCTGCTCTGCCTCAATAGGTACTCGATGGCGCTTGAATGTTTTAAAGCAGCTTTGCTTGATTCCCAAGCTGCTGGGAACTCCGAAACCCTAATTGGGTATGTTGACAAGTGCAAAAAGTTTGAGTTTTTAGCCAGGACAGGGTCCTTGGACCTCTCCGATTGGGTTTCGAATGGGTTTCACGGGAAGCCTCCGGAGCTTGCAGAGTACATTGGTGCGGTGGAGATCAGGAAATCAGATATCAGCGGCCGCGGCCTTTTCGCAACCAAGAACATTGATGCAGGGTCGTTGATCTTGGTCACCAGGGCAATTGTAATGGAGAGGAGTATATTGGCAGGTAAGGATTTAAGCGAGGATGCGCAGTTAGCAATGTGGAAGAATTTCATTCAAAAAGTTTCTGAATTTGCAAGGAAATGTTACAAAACCCGGGATTTGATTGGTATGTTGTCAATTGGGGAAGATGAGGAAGAACTTGAGATTCCTGATATAGATTTGTTTAGGCCTGAGAATGTTGGGAACATGGATTCATGTGAAATGATTGATATGGAGAAGTTGCTGGCCATTTTGGATGTGAATTCACTCACAGAGGATGCTGTTTCGGCCAATGTGTTGAGGAAGAACAATGATTCCTATGGTGTTGGATTGTGGCTATTACCTTCCTTCATCAACCATTCATGCTGTCCAAATTCGCGGCGACTGCATGTTGGGGACTACTTAATAGTTCATGCTTCTAAGGATATGAAGGCCGGAGAAGAGATCACTTTTGCCTATTTAGATCCGCTTAGTCCTCTGAGCAAGCGAAGGGAGATGTCGATGACTTGGGGGATTCAATGCAAGTGTAAGAGGTGTAGATTTGAAAACGAGGTTTTCGCCAAACAAGAGATTAAAGAGATTGAGATTGGACTTGAAAGAGGGATGGATGTTGGTGGTGTGGTTTATAAATTGGAGGAACACATGAAGAGATTGAAGGTTAGGGGAAAAGAGAAGGCCTATTTGAGAGCTTCATTTTGGTCTGCTTATTGTGAGGCTTATAGGTCTGATAGGTCTATGAAGAGGTGGGGAAGGCGCATTCCAGCCATGGATGCCGTGGTGGATAGCGTGGTTGATGTGGTGGGAGGTGATCATAGGCTGCTTAAGATCATGGTGGAGGAGTTGAAGAAAAATGGTGGCGGTGGCAGCGGCCTTGTGGGGATGGAAAAAGCTTTAAAGCTAGCAAGAGATGTGTATGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTGTTGAGTTTTGCATTGGTGATTGA 1593 0.4614 MAEEEYIQQLRSKAAELFLREEWNDSIDVYSNLISHCTHHQQQLSLHHPNHLQKLHKSLCIALCNRAEARSRLRDFHCALQDCDRALQIDASHFKTLLCKGKILLCLNRYSMALECFKAALLDSQAAGNSETLIGYVDKCKKFEFLARTGSLDLSDWVSNGFHGKPPELAEYIGAVEIRKSDISGRGLFATKNIDAGSLILVTRAIVMERSILAGKDLSEDAQLAMWKNFIQKVSEFARKCYKTRDLIGMLSIGEDEEELEIPDIDLFRPENVGNMDSCEMIDMEKLLAILDVNSLTEDAVSANVLRKNNDSYGVGLWLLPSFINHSCCPNSRRLHVGDYLIVHASKDMKAGEEITFAYLDPLSPLSKRREMSMTWGIQCKCKRCRFENEVFAKQEIKEIEIGLERGMDVGGVVYKLEEHMKRLKVRGKEKAYLRASFWSAYCEAYRSDRSMKRWGRRIPAMDAVVDSVVDVVGGDHRLLKIMVEELKKNGGGGSGLVGMEKALKLARDVYGKVVKKQAMKTLVEFCIGD* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3860 530 Gene3D Tetratricopeptide repeat domain 2 141 IPR011990 GO:0005515
Ahy13g3860 530 CDD SET 177 204 - -
Ahy13g3860 530 ProSiteProfiles SET domain profile. 174 360 IPR001214 GO:0005515
Ahy13g3860 530 Gene3D SET domain 275 420 IPR046341 -
Ahy13g3860 530 SUPERFAMILY SET domain 175 385 IPR046341 -
Ahy13g3860 530 SMART tpr_5 94 126 IPR019734 GO:0005515
Ahy13g3860 530 SMART tpr_5 7 40 IPR019734 GO:0005515
Ahy13g3860 530 SMART tpr_5 60 93 IPR019734 GO:0005515
Ahy13g3860 530 SMART set_7 174 366 IPR001214 GO:0005515
Ahy13g3860 530 CDD SET_SMYD 288 385 - -
Ahy13g3860 530 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 3 513 - -
Ahy13g3860 530 Pfam SET domain 185 359 IPR001214 GO:0005515
Ahy13g3860 530 SUPERFAMILY TPR-like 6 121 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3860 Ahy-Chr13 138028030 138029896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ahy13g3860 SET 5.50E-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3860 - - mtr:MTR_4g082140 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3860 13 138028030 138029896 Ahy3g3589 3 135158454 135160447 hybridization