Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3859 ATGGAAGGAAGTAGTAAAAGTTGTGAACTACTACCACCAGGGTTTAGATTCCACCCAACAGATGAGGAGCTAATTGTGTATTACCTTTGTAACCAAGCAACATCAAAGCCCTGCCCTGCTTCCATCATCCCTGAAGTTGACATCTACAAATTTGATCCATGGGAATTGCCAGGGAAGGCTGAGTTTGGGGAGAAAGAATGGTACTTCTTTAGCCCAAGGGAAAGGAAGTATCCCAATGGGGTTCGGCCTAACCGCGCAACAGTTTCTGGGTATTGGAAGGCCACAGGGACAGACAAGGCTATTTACAGCAAGTGTAAGCATGTTGGTGTCAAGAAGGCCTTGGTTTTCTACAGGGGTAGACCTCCAAAGGGGATCAAGACTGATTGGATCATGCACGAATATCGTCTTCTTCAACAATCTAATCACAACAGCAGGATCACTGGTTCTATGAGACTGGATGACTGCGTCTTGTGTAGGATATATAAGAAAAAACATGCTGCTAAAGCATTGGATCAAGGACAGGAATACCCAACAACAGTTCAAATTAATCTAAATGCATCAACCAACAATGATGATGAGAAGGAGTTGATGATGATGAAGAATCTTCCAAGGACTTGTTCCCTTACTTATCTTTTGGACATGAATTACTTTGGTCCAATCTCACAGCTATTGTCTGATGGATCCTACAACAAGTCATCAACCTTTGAAATATTTCAACATAGCAATAGTGTTGACAACATTGGAATAGTGGATCCTCTTGTCAAAACTCAAATGGTTGAAATGGATGATAGCTATTATGCTCAAGATTCAGGCAAGTCCCAAGTGATGAAGCAAGGGAATGATTTAAGAGGATATTACTAA 861 0.4146 MEGSSKSCELLPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPGKAEFGEKEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSKCKHVGVKKALVFYRGRPPKGIKTDWIMHEYRLLQQSNHNSRITGSMRLDDCVLCRIYKKKHAAKALDQGQEYPTTVQINLNASTNNDDEKELMMMKNLPRTCSLTYLLDMNYFGPISQLLSDGSYNKSSTFEIFQHSNSVDNIGIVDPLVKTQMVEMDDSYYAQDSGKSQVMKQGNDLRGYY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3859 286 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Ahy13g3859 286 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Ahy13g3859 286 PANTHER NAC TRANSCRIPTION FACTOR 56 6 261 - -
Ahy13g3859 286 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 6 261 - -
Ahy13g3859 286 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Ahy13g3859 286 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3859 Ahy-Chr13 138011508 138012846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3859 1 223 NAC Transcription Factor Family AT1G69490 66.234 4.66e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy13g3859 NAM 3.00E-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3859 - - adu:107489303 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3859 13 138011508 138012846 Ahy13g3859 13 138011508 138012846 ECH
Ahy13g3859 13 138011508 138012846 Ahy3g3588 3 135147802 135149043 hybridization