Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3855 ATGGCTCTCATTGGGTTTCTCTTGGTTAGTTTTCTTACTATGTTCTCCTCAGCTTACGCCAATGGTGGAGCAGGATGGACCAATGCTCATGCTACCTTCTATGGCGGGGGTGATGCATCAGGGACAATGGGTGGGGCTTGTGGATATGGAAACCTCTATAGCCAGGGGTACGGAACAACCACTGCTGCTTTGAGCACTGCACTTTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATTAAGTGTGTGAATGACCAGAAATGGTGCCTCCCTGGCTCCATTGTGGTCACTGCCACTAATTTCTGCCCTCCAAACAATGCATTGCCAAACAATGCAGGTGGGTGGTGCAACCCTCCTCTTCACCACTTTGATCTAGCTCAGCCTGTGTTCCTCCGCATTGCTCAATACAAAGCTGGAATAGTCCCTGTCGCTTACAGGAGGGTGGCATGCAGGAGAAGAGGAGGAATAAGGTTCACTATTAATGGTCATTCCTACTTCAACCTAGTACTAATCACAAACGTTGGTGGTGCTGGTGATGTTCATTCTGTGTCCATCAAGGGTTCAAAAACCGGTTGGATGCCAATGTCAAGAAACTGGGGACAAAACTGGCAGAGCAACAACTACCTCAATGGCCAAAGCCTCTCATTCAAGGTCACTACAAGTGATGGCCGTACAGTGGTCTCTAACAATGTTGCCCCAGCTGGTTGGACCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 750 0.488 MALIGFLLVSFLTMFSSAYANGGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTTTAALSTALFNNGLSCGSCYEIKCVNDQKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWTFGQTYTGAQFH* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3855 249 SUPERFAMILY Barwin-like endoglucanases 10 174 IPR036908 -
Ahy13g3855 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Ahy13g3855 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Ahy13g3855 249 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664
Ahy13g3855 249 SMART dpbb_1 61 146 IPR007112 -
Ahy13g3855 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Ahy13g3855 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Ahy13g3855 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Ahy13g3855 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Ahy13g3855 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Ahy13g3855 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Ahy13g3855 249 PANTHER EXPANSIN 6 248 - -
Ahy13g3855 249 Gene3D - 12 152 IPR036908 -
Ahy13g3855 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Ahy13g3855 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Ahy13g3855 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Ahy13g3855 249 Gene3D - 156 249 IPR036749 -
Ahy13g3855 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Ahy13g3855 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3855 Ahy-Chr13 137958919 137960571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3855 1 249 Expansin Gene Family AT2G03090 80.321 1.19e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3855 - - gmx:100527059 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3855 13 137958919 137960571 Ahy13g3855 13 137958919 137960571 ECH
Ahy13g3855 13 137958919 137960571 Ahy11g1918 11 124665604 124668075 ECH
Ahy13g3855 13 137958919 137960571 Ahy20g2547 20 133909401 133912168 ECH
Ahy13g3855 13 137958919 137960571 Ahy3g3585 3 135100683 135102352 hybridization