Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3854 ATGGGTAGGGTAAAGCTGAAGATAAAGAAGCTGGAGAACATGAATGGGCGTCAAGCAACATATGCTAAAAGGAAGAATGGAATTATCAAAAAGGCTACAGAGTTATCTATTCTTTGTGATATTGATATTATACTTCTCATGTTCTCACCAACTGGAAAACCTTCTTTGTGTAGAGGCAGGCGAAGTAACTTTGAGGAGGTTATTGCAAAGTTTTCTCAACTAACTCCACAAGAAAGAGCAAAAAGGAAGTTGGAGAGTCTTGAGGCACTGAAAAAGACATTTAAGAAGTTAGATCATGATGTAAATATACAAGAATTTTTGGGTACAAGTAGTCAAACTATTGAGGACCTAAGTAATCAAGCTAGGCTATTACAGACTCAAATTTCTGAAACACAGAAGAGATTAAGTCAGTGGAAGGAATTTGAAAAAATCAATAATGTGGAACAACTTGAACAGATGGAAAATTCATTGAGAGATTCAATCAATCAAATTCGAAACCGTAAGGAACATATTAAAAACCAACAGCTTGTGTCACTGCAATGCAATAACCAGTTCAATGAAATGCATATTCCGTTTAGAATGGGTACTGAGCAGCATCTCCAACCTCTACCATGGATTGGTAATGGTGACAGCCCAAATCTAGTTTTACCTGATGACTCTAGCTTGCTTCTCCACAAAGATGTAGAGGGATCTGCAAGCTCATCATTTGGGAGTTATGCAAGTTACATTGGATCAAGTAGTAAAACAGATATTTCAAACTCAGGGCAAGAAAATGGTGTCCTAAGTGATTTGAGCAGCACTACTGCTCCATTGAGACTCCCATTGAATAATGGACATCAGTTTCCATACATGCCATCATACAATTTCAATTTGCTGAATGATTTCAAGTTCCAAGCAGCTCCAGAGATGAATCATCATCATAATCAGCCACAAGAAAACCATAATTTAAGTTTTCATCATCATGTCAACAATGGAAACTTTGAAGCCCCAAGGAATGCTTATGACTCCAATCACCACCACCACCATGGTTGGGCTTCCACTTCAGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTATGCCCAGCAACCAAACTGA 1101 0.3824 MGRVKLKIKKLENMNGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPTGKPSLCRGRRSNFEEVIAKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQTQISETQKRLSQWKEFEKINNVEQLEQMENSLRDSINQIRNRKEHIKNQQLVSLQCNNQFNEMHIPFRMGTEQHLQPLPWIGNGDSPNLVLPDDSSLLLHKDVEGSASSSFGSYASYIGSSSKTDISNSGQENGVLSDLSSTTAPLRLPLNNGHQFPYMPSYNFNLLNDFKFQAAPEMNHHHNQPQENHNLSFHHHVNNGNFEAPRNAYDSNHHHHHGWASTSGPCAVTMFDEHLYAQQPN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3854 366 CDD MADS 2 54 - -
Ahy13g3854 366 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Ahy13g3854 366 Coils Coil 77 97 - -
Ahy13g3854 366 Coils Coil 147 174 - -
Ahy13g3854 366 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy13g3854 366 Coils Coil 114 134 - -
Ahy13g3854 366 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy13g3854 366 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy13g3854 366 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy13g3854 366 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 365 - -
Ahy13g3854 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Ahy13g3854 366 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Ahy13g3854 366 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Ahy13g3854 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3854 Ahy-Chr13 137952890 137956040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3854 1 366 Type I MADS-box Gene Family AT2G03060 50.000 1.10e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy13g3854 SRF-TF 1.40E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3854 - - lang:109356063 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3854 13 137952890 137956040 Ahy3g3584 3 135094726 135097927 hybridization