Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3853 ATGAACTCATGCCCATCTACCTTTATATACTCTTCCTCATCACAGCAAAATACCAGTAATTCAATGGGGATGGTTTATGAAGACATGGCTTCTCTTTCTCTTTGCTCCAACTACACTCTCACCCCCTCCGCACCCAGCTGGGGCTTCCCCTTTGAGGAGCACCCCACTCACAACAGTGATCTTGTGGAGGGTACTACAAAAGGTTCTGATAGCAGCGAAGATAATGGGGTTATTGGAGAAAACAATAACAACAACAACAACAACAATAATAACAACCCTAATAATAAAGAGGGAGAGAGTAGTAGCGGACAGTCAAAGCTTTGTGCAAGAGGTCACTGGAGACCAGCAGAAGATTCAAAACTGAAGGAGCTTGTTGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGTTGTAGACTGAGATGGTTCAACCAGCTTGACCCGAGAATAACGAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGGCTGATGCAGGCTCATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGTTGTTCCCTGGAAGAACCGATAACGCTGTTAAAAATCATTGGCATGTTATTATGGCTAGAAAGTATAGGGAACAATCCAGTGCTTATAGGAGAAGAAGGCTCACACAATCAAACAACTTTTACAGAAGAATTGACCATAATAATAATCATAATAATAATAATAATGTATCATCAGAATCATCACCACCACCACACTGTTTTGTGGCTGGCTTCTCATCACTACCGTTTCATGGTGGTGTTCTTGACTTTGGTGCCAATAATAAGCCTTATGCTGCTGTTGCTTCCTCTTCTTCTTCCACCTTCAATTTCTTCTCTGGAGGTAGAGGCAATAATAATAGTAGTAGTAACAGTGAGATGGTAGGAGGAGAGTATTATTATGGAAGTAATCATCATCATCATTATAATCAGCAGCAAGCACATAATAATAATCATGCTTACTACACTCGTTATCCTAATCATCAGTATATGATGATGATGATGCCATCAGTGCAACAGCATCAAAACAACAACCATAACAAGAATTTTTACAGCTTCTCATCAAATTCAAGCACCACAGTAGCACAGGTGCTAGGCAGTGATCCTTCACTATCATCCATGGCAGAACAACAACACAGAGATCATGAAGAAGCCAGTGACCCCCCAACAACAATCCCAGAGACTCCGTTATTTATTGACTTCCTTGGAGTAGGAGCCACAACATGA 1269 0.4169 MNSCPSTFIYSSSSQQNTSNSMGMVYEDMASLSLCSNYTLTPSAPSWGFPFEEHPTHNSDLVEGTTKGSDSSEDNGVIGENNNNNNNNNNNNPNNKEGESSSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRITRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLTQSNNFYRRIDHNNNHNNNNNVSSESSPPPHCFVAGFSSLPFHGGVLDFGANNKPYAAVASSSSSTFNFFSGGRGNNNSSSNSEMVGGEYYYGSNHHHHYNQQQAHNNNHAYYTRYPNHQYMMMMMPSVQQHQNNNHNKNFYSFSSNSSTTVAQVLGSDPSLSSMAEQQHRDHEEASDPPTTIPETPLFIDFLGVGATT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3853 422 Gene3D - 163 247 - -
Ahy13g3853 422 Gene3D - 110 161 - -
Ahy13g3853 422 SUPERFAMILY Homeodomain-like 110 203 IPR009057 -
Ahy13g3853 422 PANTHER MYB PROTEIN-RELATED 22 287 - -
Ahy13g3853 422 Pfam Myb-like DNA-binding domain 162 205 IPR001005 -
Ahy13g3853 422 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
Ahy13g3853 422 CDD SANT 113 154 IPR001005 -
Ahy13g3853 422 MobiDBLite consensus disorder prediction 61 107 - -
Ahy13g3853 422 PANTHER MYB PROTEIN-RELATED 278 421 - -
Ahy13g3853 422 MobiDBLite consensus disorder prediction 383 410 - -
Ahy13g3853 422 MobiDBLite consensus disorder prediction 51 111 - -
Ahy13g3853 422 ProSiteProfiles Myb-like domain profile. 157 207 IPR001005 -
Ahy13g3853 422 ProSiteProfiles Myb-like domain profile. 110 156 IPR001005 -
Ahy13g3853 422 SMART sant 161 209 IPR001005 -
Ahy13g3853 422 SMART sant 109 158 IPR001005 -
Ahy13g3853 422 PANTHER MYB TRANSCRIPTION FACTOR 22 287 - -
Ahy13g3853 422 PANTHER MYB TRANSCRIPTION FACTOR 278 421 - -
Ahy13g3853 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 211 IPR017930 -
Ahy13g3853 422 CDD SANT 164 204 IPR001005 -
Ahy13g3853 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 156 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3853 Ahy-Chr13 137926349 137928410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3853 80 222 MYB Transcription Factor Family AT1G69560 76.190 1.04e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy13g3853 Myb_DNA-binding 1.90E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3853 K09422 - gmx:100804537 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3853 13 137926349 137928410 Ahy13g3853 13 137926349 137928410 ECH
Ahy13g3853 13 137926349 137928410 Ahy3g3583 3 135067358 135069316 hybridization