Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3842 ATGACGAGGATACCCCTATTGGAAGGCATTTGGCCCTCCTCGCTATATACACGCCAAAATCCCCTTTCTTTCTCTCGTTTCATTAATTGCAGGTCTGTCTCAGCTCCTTTTTCGCCGCTGAGTCTCAGATTCCCTTGTTATCTCTCAGGATTCACCAAACCGATCCCCTTCCCTTCTTATCTTTTGGGAGAAATGAGCGATCATCTGGTGCTGTACGTTGACCGGCTGGTGCGTCCCGTTGTGCCAGTCGAGCCTCTAGCTCAGCACCCGGCTCAGCCATCTCCCGAACCCGAACCGCCGCTAGATGAACCTCCGGCCGCCACGGCGGGGCCCTCCCATTCTGCTCCGAGAGCCGAGGACGAGGATGAGGACGAGGATGAGGAGGCGCCGCTGTTGCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCTCGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGTGGTGCTGCATTTTGCCGTTCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTTCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCAGCAACTCAAGTTGCGTTCGTTTTTCAATCCGGGCAGCGTAGGGGTCTGCAGTTCGCCATTGCACCAGGACCTGCAGTGAGTACACACCAGGAACAAGTGTAG 1068 0.5234 MTRIPLLEGIWPSSLYTRQNPLSFSRFINCRSVSAPFSPLSLRFPCYLSGFTKPIPFPSYLLGEMSDHLVLYVDRLVRPVVPVEPLAQHPAQPSPEPEPPLDEPPAATAGPSHSAPRAEDEDEDEDEEAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSTHQEQV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3842 355 SUPERFAMILY RING/U-box 135 187 - -
Ahy13g3842 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 192 IPR013083 -
Ahy13g3842 355 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 65 343 IPR033275 -
Ahy13g3842 355 Pfam RING-variant domain 137 182 IPR011016 GO:0008270
Ahy13g3842 355 MobiDBLite consensus disorder prediction 87 106 - -
Ahy13g3842 355 SMART ringv_2 136 183 IPR011016 GO:0008270
Ahy13g3842 355 Pfam Protein of unknown function (DUF3675) 188 306 IPR022143 -
Ahy13g3842 355 MobiDBLite consensus disorder prediction 87 129 - -
Ahy13g3842 355 Coils Coil 225 245 - -
Ahy13g3842 355 ProSiteProfiles Zinc finger RING-CH-type profile. 129 189 IPR011016 GO:0008270
Ahy13g3842 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 65 343 - -
Ahy13g3842 355 CDD RING_CH-C4HC3_MARCH 137 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3842 Ahy-Chr13 137796166 137799076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3842 121 183 C3H Transcription Factor Family AT2G37950 39.394 2.43e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3842 - - ahf:112734090 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3842 13 137796166 137799076 Ahy13g3842 13 137796166 137799076 ECH
Ahy13g3842 13 137796166 137799076 Ahy3g3575 3 134911130 134913964 hybridization