Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3811 ATGTCCAGCAGAAGATCCTCTTCGGGTGCTCCAACTTCCGCCGGGATGACCGATGCTCAAATCACCGATCTCGTCTCCAAGTTGCAACAACTCATCCCTCAGCTCCGCTCTACGCATTCCGACAAGGTTTCTGCGGCAAAGGTGTTACAAGAGACTTGTAGCTACATTAAGACCTTGCATAGAGAGGTTGATGATCTTAGCGACCGATTGTCCCAGCTTTTGGCCAACACAGACTCAAATACCGCACAAGCAGCCATTATTAGGAGCTTACTTATGTAA 279 0.4875 MSSRRSSSGAPTSAGMTDAQITDLVSKLQQLIPQLRSTHSDKVSAAKVLQETCSYIKTLHREVDDLSDRLSQLLANTDSNTAQAAIIRSLLM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3811 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 82 IPR036638 GO:0046983
Ahy13g3811 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Ahy13g3811 92 CDD bHLH_AtPRE_like 17 76 - -
Ahy13g3811 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Ahy13g3811 92 Coils Coil 56 76 - -
Ahy13g3811 92 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Ahy13g3811 92 Gene3D - 19 88 IPR036638 GO:0046983
Ahy13g3811 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3811 Ahy-Chr13 137329472 137330304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3811 16 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 70.130 1.47e-31 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g3811 HLH 1.40E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3811 - - gmx:100804830 137.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3811 13 137329472 137330304 Ahy13g3811 13 137329472 137330304 ECH
Ahy13g3811 13 137329472 137330304 Ahy11g1881 11 122859519 122861470 ECH