Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3808 ATGGCTTTCTTCCCAGCAAATTTCATGTTACAAACCCCACATCATCATCACCAAGATGAACATCAACCTCCACCATCACTCAACTCAATCCTAACTTCATGTGCACCTCAAGAGTACCACCACGGAGGAGGAGGGTATCTAGGGAAAAGATCGATGTCATTCTCAGGGATAGAGGTGGGAGAAGTGGAAGGGAATGGAGGAGAGGAAGAGGTGTCAGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGGGCTCTAGGCCTTCAACCTAGACAGATTGCTATTTGGTTCCAAAACAGAAGAGCCAGATGGAAGACCAAGCAATTGGAGAAGGATTATGATCTTCTTAAGCGCCAGTTTGATGCTGTTAAAGCTGATAATGATGCTCTTCAAGCCCAGAATCACAAGCTTCACACTCAGATAATGGCACTGAAAAGTAGAGAACCAACAGAATCAATAAACCTAAACAAAGAGACAGAGGGATCAAGCAGCAACAGGAGTGACAACAGTTCAGATATCAAGTTGGATATATCAACAAGGACACCTACTACTACTACTACTACTTCAGCCATTGACAGTCCTCTATCCACTCATCAAAACAACAACAATAACAGCAGAACACTGTTTCCATCACCATCAAATAATGCTGCTGCTGCTGCTGCCACTGCCAGGCCAACAGAAGTTGCACAGCTTTTTCAAACCACTCCACATCATCATCATCATCATCATCATCACATGGTCAAAGAAGAGAGCTTGAGCAACATGTTCTGTGCCATTGATGACCAAACTGGCCTCTGGCCATGGTTAGAGCATCAAAATTTCAATTGA 915 0.4448 MAFFPANFMLQTPHHHHQDEHQPPPSLNSILTSCAPQEYHHGGGGYLGKRSMSFSGIEVGEVEGNGGEEEVSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAVKADNDALQAQNHKLHTQIMALKSREPTESINLNKETEGSSSNRSDNSSDIKLDISTRTPTTTTTTSAIDSPLSTHQNNNNNSRTLFPSPSNNAAAAAATARPTEVAQLFQTTPHHHHHHHHHMVKEESLSNMFCAIDDQTGLWPWLEHQNFN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3808 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Ahy13g3808 304 SMART HOX_1 79 140 IPR001356 GO:0003677
Ahy13g3808 304 Gene3D - 73 142 - -
Ahy13g3808 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 304 - -
Ahy13g3808 304 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Ahy13g3808 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Ahy13g3808 304 Coils Coil 128 176 - -
Ahy13g3808 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Ahy13g3808 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Ahy13g3808 304 MobiDBLite consensus disorder prediction 62 82 - -
Ahy13g3808 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Ahy13g3808 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 304 IPR045224 GO:0003700
Ahy13g3808 304 CDD homeodomain 81 137 IPR001356 GO:0003677
Ahy13g3808 304 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Ahy13g3808 304 MobiDBLite consensus disorder prediction 172 249 - -
Ahy13g3808 304 MobiDBLite consensus disorder prediction 172 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3808 Ahy-Chr13 137278281 137279965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3808 1 304 Homeobox Transcription Factor Family AT1G69780 57.605 4.03e-110 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy13g3808 Homeodomain 1.60E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3808 K09338 - gmx:100790840 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3808 13 137278281 137279965 Ahy13g3808 13 137278281 137279965 ECH