Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3791 ATGGCACCTAAAATTAAAAATTTGTTTTATTTTCTTTGTTTGGCAATTACCTTTATTCCCAGCCTCTATGCTAATGTCTTGGACACTGAAGCGTTTTGGCAGGACCAACTAAGAATGTTTGATTCTTACTGGAGGGAAAGAGCCGAGGTTGCTAGGGAGGAAAACGAGAAAGCCTATTTCCCTGATCCCTTTGCCATCTCCGGCAACTTCACCTCCGCCATTAGCTGGGACATTCTTGGAAAGAATGGAGGAAGAAGGATGTTGAAAGGAAAGAACAAAGGAGCTCCATGTGTGGCGAGCAACCCCATTGACAGGTGCTGGAGGTGTGACCCACACTGGGCTGATAACCGCCAAAAGCTTGCGAATTGTGTTATGGGATTCGGCAGAAACACGTACGGAGGAAAAGGAGGAAAATACTACGTGGTCACCGACCCTTCCGATGATGACTTGCTGGCTCCCAAGCCCGGCACTCTTCGCCATGCAGTGACAAGAACTGAACCCTTGTGGATCATCTTCTCCCGCAGCATGGTGATCACCCTCCAGCAAGAGCTCATCATGGCTGGCAACAAGACCATTGATGGAAGAGGCTTTGATGTCCACATTGCACACGGTGCTGGCATCACCATCCAGTTCATCAAGAATGTCATCATCCATGGAATCAAGGTCTACAACATCGTCGTCAAGGACGGTGGCATGATCAGGGACTCCGAGAAACATTACGGCTTCAGGACAAAGAGTGACGGTGATGGTATCTCCATCTTTGGCTCTAGCAACATCTGGATCGACCATGTTTCCATGAGAAACTGCTCCGATGGATTGATTGATGCCATTATGGGCTCCACCGCCATTACCATCTCCAACGGCCACTACACTGACCACAACGAGGTGATGCTGTTTGGAGCCAGTGACAGCTACACCGGCGACAAGATCATGCAAATCACCTTGGCATTCAACCACTACGGCAAGAGGTGTGTTCAGAGAATGCCAAGAGCCAGATATGGTTTCGTCCACATTGTGAACAATGATTATACTCATTGGGAGATGTATGCCATTGGTGGCAGCAAGAACCCTACCCTCATCAGCGAGGGTAACAGGTTCATCGCCCCCCCGAACCGGTTTGCCAAGGAGATCACCAAGAGAGAATACACAGAAGAAAAAATATGGAAGGACTGGCAATGGAGATCAATCAATGATGAGTACTTGAATGGAGCATTCTTCATTCAATCAGGACCTGAACTGAAGAACAGGCCATTCTCAACAAAGGACATGATCACAGCCAAGCCAGGAACATATGTTGGACAGCTAACACGCTATGCGGGTGTTCTTCCATGCAGAATTGGACATCCCTGCTAG 1353 0.4834 MAPKIKNLFYFLCLAITFIPSLYANVLDTEAFWQDQLRMFDSYWRERAEVAREENEKAYFPDPFAISGNFTSAISWDILGKNGGRRMLKGKNKGAPCVASNPIDRCWRCDPHWADNRQKLANCVMGFGRNTYGGKGGKYYVVTDPSDDDLLAPKPGTLRHAVTRTEPLWIIFSRSMVITLQQELIMAGNKTIDGRGFDVHIAHGAGITIQFIKNVIIHGIKVYNIVVKDGGMIRDSEKHYGFRTKSDGDGISIFGSSNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARYGFVHIVNNDYTHWEMYAIGGSKNPTLISEGNRFIAPPNRFAKEITKREYTEEKIWKDWQWRSINDEYLNGAFFIQSGPELKNRPFSTKDMITAKPGTYVGQLTRYAGVLPCRIGHPC* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3791 450 Gene3D - 100 443 IPR012334 -
Ahy13g3791 450 PANTHER PECTATE LYASE 6 450 - -
Ahy13g3791 450 Pfam Pectate lyase, N terminus 39 88 IPR007524 GO:0030570
Ahy13g3791 450 PANTHER PECTATE LYASE 18-RELATED 6 450 IPR045032 GO:0030570
Ahy13g3791 450 SMART amb_all 175 372 IPR002022 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 421 444 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Ahy13g3791 450 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Ahy13g3791 450 Pfam Pectate lyase 189 366 IPR002022 -
Ahy13g3791 450 SUPERFAMILY Pectin lyase-like 101 441 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3791 Ahy-Chr13 137092574 137094394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3791 39 450 Polysaccharide Lyase AT1G14420 59.016 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3791 K01728 - gmx:100798579 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3791 13 137092574 137094394 Ahy13g3791 13 137092574 137094394 ECH