Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3779 TTTTATGAAGCTGATAGGATTTTGGAATTAGGATTTGGACAAGATATACAGGAAATACTACATCTTTTGGGTTCAAGGAAAGCAGAAAATGATAACAAGGACAGTACAGTTCCAAGAAATTCTGAATTTCAAAGGCAGAATTTACTTTTTTCTGCCACCTTAAATGAGAAAGTGAACCATCTTGCTAAATTAAGTTTACACAATCAAGTGATTATTGGTCTTGAGGGTAAAACAAGAAAACCAATATCAACAATTGAAAGCATTAATCCTTCAGAGTCTGATGAAGAAGACGAAGTCAAGTATTCCAGTAAAATACCAACAGCTGTAGATTATAAAATCCCCACACAGTTAATTCAAAGATACGTGAAAGTGCCTTGTGGTTCTCGGCTTGCTGTTTTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCGCAAAAGGTTAGGCTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTATCGACTGATCCTCAAAAAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATATGCTTTGCTTTTGTCCACTGATGATTTTGCTAGAGGCTTGGATTTTCCAAAGGTTCGATGCATCATACAATATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTTGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGATGGATAATTTTACATTACACGGACAGAACAAACAAGTAAAGAAGTCTATTTTCATGGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTTCAAGCCCAAGATGAATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCGAAAGCTTTGCATTGAAACAACAACCATCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAGAAAAGTGGGCTATCGAAAAAGAGAAAAGTTGCTAGAGTGACTTAA 1251 0.3797 FYEADRILELGFGQDIQEILHLLGSRKAENDNKDSTVPRNSEFQRQNLLFSATLNEKVNHLAKLSLHNQVIIGLEGKTRKPISTIESINPSESDEEDEVKYSSKIPTAVDYKIPTQLIQRYVKVPCGSRLAVFLSILKHLFERDTSQKVRLVVFFSTCDAVDFHHSLLSEFHLSTDPQKKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKYALLLSTDDFARGLDFPKVRCIIQYDSPGEATEYVHRVGRTACLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVMDNFTLHGQNKQVKKSIFMDLHPWVLCLQKALESFIIFKPKMNELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAESFALKQQPSLVGQSFQKQNKKRKRFEKKSGLSKKRKVARVT* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3779 416 Gene3D - 126 413 IPR027417 -
Ahy13g3779 416 SMART DUF4217_3 322 387 IPR025313 -
Ahy13g3779 416 Gene3D - 1 75 IPR027417 -
Ahy13g3779 416 Pfam Domain of unknown function (DUF4217) 324 384 IPR025313 -
Ahy13g3779 416 Pfam Helicase conserved C-terminal domain 136 257 IPR001650 -
Ahy13g3779 416 PANTHER RNA HELICASE 3 414 - -
Ahy13g3779 416 MobiDBLite consensus disorder prediction 388 416 - -
Ahy13g3779 416 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 72 IPR014001 -
Ahy13g3779 416 SMART helicmild6 178 260 IPR001650 -
Ahy13g3779 416 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 3 414 - -
Ahy13g3779 416 MobiDBLite consensus disorder prediction 392 416 - -
Ahy13g3779 416 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 136 307 IPR001650 -
Ahy13g3779 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 281 IPR027417 -
Ahy13g3779 416 CDD SF2_C_DEAD 117 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3779 Ahy-Chr13 136829637 136833125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3779 195 292 Eukaryotic Initiation Factors Gene Family AT3G19760 31.313 3.01e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3779 K14806 - gmx:100805157 620.157