Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3751 ATGGTGATCTGTTTGCAATTCGGGTCTGGAATTGTTGCTCGTGGTTGTTACTTGGATGCTTACATGAGTTCTCAGATCAAAAGACCAATGGTATCTTCTAGAGGAGAAGCCTCCGGGCAACCCCAGGTTACGATTGGTAATGCTGTTCAGAAACTGACCCATGATGATGCCGTAAAATACCTGAATACCGTGAAGGATGCGTTTCATGATAAGCCGAAAAAGTATGCTGACTTTTTAAAAGTAATGAAAGATTTCAAGGCTCAAAGAACTGATACAGATGGTGTCGTAGCAAGAGTGAAGAAGCTATTTAAAGGGCATAGAAATCTAATTGTAGGGTTTAACACCTTCTTGCCTAAGGAACATGAAATTGCAGTTCCATTGGAGGATGAACAACCTCAGCGGAATAAGCCTGTTGATTTTGTTGAAGCTGTAAATTTTGTGGGCAAGGTCAAGAGCCAGCTTCAAGGCGATGACAGTGTCTATAAGTCGTTTCTTGATATATTGGAGATGTACAGAAAGAAAACCAAGACTATATCTGAGGTTCTCTTAGAGGTTGCTGCACTTTTCCGTGGCCATGAAGATCTTCTTGAGGAGTTTATTCGTTTTCTTCCTGATAAGAGCTATGCAATGCCAGCTGTTGTACCAATGGATGTTGAGAAGAAAGAAAGTACCATGGCTTCTCATGGGGACTCTGGTGCTGAACCATTCCATGATGAACATGAAAAGTTTGACCTGTGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGTAGTCAAGTCGATGCTTTCCTTGAAAAAGTCAAGGAGGAATCTCGAACTCCTGAGGTTTACCAGGAATTTTTGAAGTGTCTACTTTTCTACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATCGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGATGGATTTAATGATTTTTTGGCACAATGCGAGAAGAATGAGTCCTTGCAGAATGAAGGACATGGATTGAAAGCATTGAAGGCAGAGGACATGGATATAGATCAAGGGGTGGAAAAAGAAAGGGATGGAGAGTCACCAATTACTGCCTCATGCATCGAAACACTATTTGAAAAAATAGTCATAGGATGCAAAAGCATAATAAAAAAAGAATGA 1164 0.4064 MVICLQFGSGIVARGCYLDAYMSSQIKRPMVSSRGEASGQPQVTIGNAVQKLTHDDAVKYLNTVKDAFHDKPKKYADFLKVMKDFKAQRTDTDGVVARVKKLFKGHRNLIVGFNTFLPKEHEIAVPLEDEQPQRNKPVDFVEAVNFVGKVKSQLQGDDSVYKSFLDILEMYRKKTKTISEVLLEVAALFRGHEDLLEEFIRFLPDKSYAMPAVVPMDVEKKESTMASHGDSGAEPFHDEHEKFDLCPMSSTCEDKSSLKSMCSQVDAFLEKVKEESRTPEVYQEFLKCLLFYSREIITRQELQSSVGDLLGKFPDLMDGFNDFLAQCEKNESLQNEGHGLKALKAEDMDIDQGVEKERDGESPITASCIETLFEKIVIGCKSIIKKE* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3751 387 SUPERFAMILY PAH2 domain 50 119 IPR036600 GO:0006355
Ahy13g3751 387 PANTHER SIN3B-RELATED 35 343 IPR039774 GO:0003714
Ahy13g3751 387 Gene3D Paired amphipathic helix 56 118 IPR036600 GO:0006355
Ahy13g3751 387 ProSiteProfiles PAH domain profile. 136 206 IPR003822 GO:0006355
Ahy13g3751 387 ProSiteProfiles PAH domain profile. 50 120 IPR003822 GO:0006355
Ahy13g3751 387 PANTHER SIN3A, ISOFORM G 35 343 - -
Ahy13g3751 387 Gene3D Paired amphipathic helix 134 207 IPR036600 GO:0006355
Ahy13g3751 387 Gene3D Paired amphipathic helix 258 329 IPR036600 GO:0006355
Ahy13g3751 387 ProSiteProfiles PAH domain profile. 258 327 IPR003822 GO:0006355
Ahy13g3751 387 Pfam Paired amphipathic helix repeat 74 117 IPR003822 GO:0006355
Ahy13g3751 387 Pfam Paired amphipathic helix repeat 160 203 IPR003822 GO:0006355
Ahy13g3751 387 Pfam Paired amphipathic helix repeat 280 324 IPR003822 GO:0006355
Ahy13g3751 387 SUPERFAMILY PAH2 domain 133 205 IPR036600 GO:0006355
Ahy13g3751 387 SUPERFAMILY PAH2 domain 263 327 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3751 Ahy-Chr13 136481489 136485241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3751 3 144 WRKY Transcription Factor Family AT4G12020 38.356 6.21e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy13g3751 PAH 2.40E-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3751 13 136481489 136485241 Ahy13g3751 13 136481489 136485241 ECH