Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3750 ATGAAGAGGTCCAGAGAGGATGTTTACATGAGTTCTCAGCTCAAACGACCTATGGTATCTTCTAGAGGAGAACCCTCCGGGCAACCCCAGGTTACGATTGGTAATGCTGGTCAGAAACTGACCACAGATGATGCCTTACAATACCTGAAGGCCGTGAAGGATATGTTTCATGATAAGAAGGAAAAGTATGATGACTTTTTAGAAGTAATGAAAGATTTCAAGGCCCAAAGAATTGATACAGCGGGTGTCATAGCAAGAGTGAAGGAGCTATTTAAAGGGCATAGAAATCTAATTTTAGGGTTTAATACCTTCTTGCCTAAGGGATATGAAATTACACTTCCGTTGGAGGATGAACAACCTCAGCAGAAGAAGCCTGTTGAATTTGTTGAAGCTATAAATTTTGTGGGCAAGATCAAGAGTCGGTTTCAAGGCGATGACCGTGTGTATAAGTCGTTTCTTGATATATTGAATATGTACAGAAAGGAAACCAAGACTATCTCTGAGGTTTACTTAGAGGTTGCTGCACTTTTCCGTGACCATGAAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATAATTCAGTATCAGCTTCAACTCATTATACTTCTGCCCGAAATTCTATACTTCGTGATAAGAGCTCTGCAATGCCAACTATTAGACCAGTGCATGTTGAAAAGAAAGAAAGGACCATGGCTTCTCATGGTGAATGTGATCTCAGCGTTGAGCATCCTGATCAAGAACTCGATAAAAGTTTGGTGAGGGCTGATAAGGACCAGAAAAGGCGTGCTGAAAAGGAAAAGGACCGTCGAGAAGAGAGAGATAGGAGAGAAAGGGAAAGGGATGATAGAGATTATGATGTTGATTGTAATAGAGACAGTTTATCCCACAAGCGAAAATCTGGTCGTAGGACTGATGACTCTGGTGCTGAACCATTCCATGATGAAGATGAAAATTTTGACCTGCGCCCTATGTCATCTACTTGTGAAGATAAAAGCTCTTTGAAAAGTATGTGTAGTCAAGTCGTTGCTTTCCTTGAAAAAGTCAAGGAGAAATTACGAACTCCTGAGGTTTACCAAGAATTTTTGAAGTGTCTACATATATACAGCAGGGAAATAATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTGCTGGGGAAATTTCCAGATCTTATGGAGGGATTTAATGAATTTTTGGCACAATGCGAGAAGAATGAAGGATTTCTTGCTGGCGTCATGAACAAAAAGTCCTTGCGGAATGAAGGACATGGATTGAAAGCATTGAAGGTAGAGGAGAGGGATAGAGATCGAGACCGTGATAAGGTTGAAGGGGTGAAAGAAAGGGATAGAGAGTGCCGAGAAAGGGACAAATCCACTGCAGCTGCAAATAAAGATGTTTTCGTTCCTAAGATGTCTCCATATGCCACCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTAGACCTTTCTAATTGTGAACAATGCACTCCCAGTTACCGTCTTCTTCCAAAAAATTACCCAATACAAATACCTAGCCAGAGAACAGAACTTGGTGCAGAAGTATTGAATGACCACTGGGTGTCTGTCACTTCAGGAAGTGAAGATTATTCCTTTAAACACATGCGAAAAAATCAGTTTGAAGATATTCTGTTTAGATGTGAAGATGACAGGTATGAACTTGATATGCTGATCGAGTCTGTAAATGTAGCAATCAAGCGAGTTGAAGAGCTCTTGGAAAAGATTAATACTAATATTATAAAGGGAGACAGTCCAATTCGAATTGAGGAACACTTCACAGCTTTAAATCTTAGATTGATTGAACGATTATATGGTGACCATGGGCTTGATGCAATGGATTGGCTAAGAAAGGATGCATCTCGCTTTTTGCCTGTCATATTAAACCGCTTGAGGCAGAAACATGTAGAATGCGTAAGGATGAGTGTTGCTTGTAAACCAGAGTGGGCTAAAGTACATGCTGCGAATCATCATAAATCACTTGATCACCGTAGCTTCTACTTTAAGCAGCAGGATAAGAAAAGCTTGAGTAATAAAGCCTTACTGACAGAAATAAAAGAAATTAGTGAGAAGAAATGGAAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTCTTCTTCCAAACTTGGAATTTGAGTATCCTGATCCAGAGATCCATGAAGATTTGTATCAGCTAATAAAATACTCCTGTGGAGAACTTTGTACAACTGAACAGATGGATGAAGTTTTAAAGATTTGGACTACTTTTTTAGAGCCCATGCTTGGTGTTCCTTCTCGACCCCAGAGTTGTGAAGATACAGATGATATTGTTAAGGCTAAGAGCAATTCTTCTAGAAGTGGCACTTCAAATGATTCTAATGGTAATGATAGTCATGGTTTTGGTGCGACTCCTAATAATTTAAACACTAACGAAAACAGGGATGAGAGTATTCCATTAGCACAGTCAAATTCTTTTAAAGAATGGTTAGCAAATGGGGATAGTGGAGTTAAAGAGAGTAGTCATCTTGATTCAGACCGCACTTCATACAAGATTGAAACTTTGGGCAGTAATACACAGCAGGGTAAAATACATATGATTGCATCCATCCCTGATGAAGTATCAAGAATCAATAAACAAGACCATCCGATTGAAAAGTTGGCGAGTGCTAATATCTCAGTGGCCTCTGGAATGGAGCAAAATGGAAGAACTAACATAGATAACACATCAGGACTTACTTCACCTCCATCTGGTCCTGGTAATGTTTCTGGCGAGGGAGGGCTTGGTTTACCTCCATCAAAGCTCGCTGATTCTACAAAACCTGTTACATCTTCAAATGGGGCTATTACTGAAGGCACCAAAGTTCACCGACCCAAAGATGAATCAGTTGGACACTTCAAAAGTGATAGAGAAGAGGGAGAATTATCTCCCAATGGAGACTTTGAAGAGGACAACTTTGCAGTTTATGGAGAAGCTGGTTTGGAGGGAGTGATTGAAGGGAAGGATAGTAGTACAAGCCGACAATACCAAAGTAGACATGGAGAAGAAGTTTGTGGTGAAGCCGGAGGAAGAAATGACCTTGATGATGAAGGTGAGGAAAGTCCTCATAGGTCGTCAGAGGACAGTGACCATGCTTTGGAAAATGGTGATGTTTCTGGTAGTGAGTCTGCTGATGGTGACGACTTTACAAGAGAAGAAAAAGAGTGTGGGGATCAAGAACACAATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGAAACGGCTGATGGCAATGATGTTGAGGGAGATAGTTCCTTGTTACCAATTTCAGAACACTTTCTTCTCACGGCAAAGCCTCTGGCAAAATATGTCATGCCAGTGTTGCACGAAAAAGAACATTATAGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGATTACATCAGAAATTGTATGAGAGGATTCGGTCGGCAAAGGTTAACTCGTCCTCTGATGAAAGGAAATGGGGGACTACAAATGATACTAGCTCTACTGAACAATATGGCAGGTTCTTGAATTCTCTTTATGACTTCCTGGACGGTTCTTCTGATAATACGAAGTTTGAGGATGACTGTCGAGCTATTGTTGGAACTCAGTCATATGTTTTGTTCACAATAGACAAGCTAATATATAAACTTGTTAAACATCTTCAAGCCGTTGCAGATGATGAGATGGATAACAAGCTTCTTCAATTATATGCACATGAGAAATCAAGAAAACCTGGAAGATTTTTTGATACAGTCTATCATGACAATGCTCGCATTCTTCTTCACGATGACAATATATATCGAGTTGAATGTTCACCTGCACCTACTCGTTTGTCTATTCAACTGATGGACTACGGTCGTGATAAGCCCGAAGTGACTGCTGTGTCAATTGACCCAAAATTTTCAGCATATCTGCACAATGACTTCCTAGCTGTTGTCCCTGACCAAAATAAGAAGTCTGGAATTTTCTTGAATAGGAATAAACGCAAATATGTCGTTGGCGATGAATTTACCAGCCAGGCCATGGATGGAGTCGACGTTTTCAATGGCTTGGAGTGCAAGATAGCTTGCAGTTCGTCTAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTAATACGAACAAGAAGCAGAAGGAGAACCTTGCATCATAACAATTCATTCCATGAAAAGGCCAAGCCTTCAGAGAAATGTTCAAGCAGAGCTCAACGGTATCACCAGTTGTTTACAATCATATGA 4263 0.4021 MKRSREDVYMSSQLKRPMVSSRGEPSGQPQVTIGNAGQKLTTDDALQYLKAVKDMFHDKKEKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRNLILGFNTFLPKGYEITLPLEDEQPQQKKPVEFVEAINFVGKIKSRFQGDDRVYKSFLDILNMYRKETKTISEVYLEVAALFRDHEDLLEEFTHFLPDNSVSASTHYTSARNSILRDKSSAMPTIRPVHVEKKERTMASHGECDLSVEHPDQELDKSLVRADKDQKRRAEKEKDRREERDRRERERDDRDYDVDCNRDSLSHKRKSGRRTDDSGAEPFHDEDENFDLRPMSSTCEDKSSLKSMCSQVVAFLEKVKEKLRTPEVYQEFLKCLHIYSREIITRQELQSLVGDLLGKFPDLMEGFNEFLAQCEKNEGFLAGVMNKKSLRNEGHGLKALKVEERDRDRDRDKVEGVKERDRECRERDKSTAAANKDVFVPKMSPYATKDKYLAKPINELDLSNCEQCTPSYRLLPKNYPIQIPSQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQFEDILFRCEDDRYELDMLIESVNVAIKRVEELLEKINTNIIKGDSPIRIEEHFTALNLRLIERLYGDHGLDAMDWLRKDASRFLPVILNRLRQKHVECVRMSVACKPEWAKVHAANHHKSLDHRSFYFKQQDKKSLSNKALLTEIKEISEKKWKDDVLLAIAAGNRRPLLPNLEFEYPDPEIHEDLYQLIKYSCGELCTTEQMDEVLKIWTTFLEPMLGVPSRPQSCEDTDDIVKAKSNSSRSGTSNDSNGNDSHGFGATPNNLNTNENRDESIPLAQSNSFKEWLANGDSGVKESSHLDSDRTSYKIETLGSNTQQGKIHMIASIPDEVSRINKQDHPIEKLASANISVASGMEQNGRTNIDNTSGLTSPPSGPGNVSGEGGLGLPPSKLADSTKPVTSSNGAITEGTKVHRPKDESVGHFKSDREEGELSPNGDFEEDNFAVYGEAGLEGVIEGKDSSTSRQYQSRHGEEVCGEAGGRNDLDDEGEESPHRSSEDSDHALENGDVSGSESADGDDFTREEKECGDQEHNNKAESEGEAEETADGNDVEGDSSLLPISEHFLLTAKPLAKYVMPVLHEKEHYRVFYGNDSFYVLFRLHQKLYERIRSAKVNSSSDERKWGTTNDTSSTEQYGRFLNSLYDFLDGSSDNTKFEDDCRAIVGTQSYVLFTIDKLIYKLVKHLQAVADDEMDNKLLQLYAHEKSRKPGRFFDTVYHDNARILLHDDNIYRVECSPAPTRLSIQLMDYGRDKPEVTAVSIDPKFSAYLHNDFLAVVPDQNKKSGIFLNRNKRKYVVGDEFTSQAMDGVDVFNGLECKIACSSSKVSYVLDTEDFLIRTRSRRRTLHHNNSFHEKAKPSEKCSSRAQRYHQLFTII* 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3750 1420 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 785 819 - -
Ahy13g3750 1420 SUPERFAMILY PAH2 domain 36 107 IPR036600 GO:0006355
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 14 36 - -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 433 459 - -
Ahy13g3750 1420 SUPERFAMILY PAH2 domain 121 193 IPR036600 GO:0006355
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 1061 1088 - -
Ahy13g3750 1420 SMART hdac_interact2seq4b 494 594 IPR013194 -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 957 979 - -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 213 331 - -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 1 36 - -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 904 924 - -
Ahy13g3750 1420 Coils Coil 567 587 - -
Ahy13g3750 1420 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Ahy13g3750 1420 SUPERFAMILY PAH2 domain 339 404 IPR036600 GO:0006355
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 1010 1052 - -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 1004 1101 - -
Ahy13g3750 1420 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 222 325 - -
Ahy13g3750 1420 PANTHER SIN3B-RELATED 1 1390 IPR039774 GO:0003714
Ahy13g3750 1420 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1390 - -
Ahy13g3750 1420 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 904 987 - -
Ahy13g3750 1420 Pfam C-terminal domain of Sin3a protein 1134 1380 IPR031693 -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 769 819 - -
Ahy13g3750 1420 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Ahy13g3750 1420 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Ahy13g3750 1420 Pfam Paired amphipathic helix repeat 148 191 IPR003822 GO:0006355
Ahy13g3750 1420 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Ahy13g3750 1420 Coils Coil 254 283 - -
Ahy13g3750 1420 MobiDBLite consensus disorder prediction 941 955 - -
Ahy13g3750 1420 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Ahy13g3750 1420 Gene3D Paired amphipathic helix 333 406 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3750 Ahy-Chr13 136450531 136485305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3750 15 120 WRKY Transcription Factor Family AT4G12020 55.660 2.65e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy13g3750 Sin3a_C 2.90E-55 No_clan