Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3739 ATGATTCTAACGCGTTCCGCTTTGAATTTGATGCTCCATCTCCACAATCCCCAAACTCCCTTCCAATTCTTCAACCACCGTGCTTCCACTTTTCTTCTCCGCACCACCACCACTTCTCTCCTCAAAGCTCGCTTCTTTTCTTCAACCTCTGTAGCAGCAACAGCAGCGTCATTATCTGCGCAAAGTTCAGAGGGTAGAGACACTTTCTTTGCTGAGGATAACGTTTCGTGGAGCTCACTTGGTCTCTCTGATACCCTTTCTCGTGCTCTCTCTAACATTGGCCTCAGTAGACCCTCTCTCGTTCAGGCTTCTTCAATACCATCTGTTCTTTCTGGAAAGGATGTGATTATTGCAGCAGAGACCGGAAGTGGTAAAACATACAGTTATCTAGTTCCTCTATTTGATAAGCTAAGGGACACCCATGAACATTCTCAACACAATGTATCTGATCAAGAAGTTCCTCTGCCCCAAAAGAATGTTTTCCTCATTCTTTGTCCAAATGTACAGCTTTGCGAGCAGGTAGTCAGGATGGCTAATAGTCTATGTGGAGACAATGGTGAACCAATTGTTAGCGTGGCAGCAATTTGTGGCAGACAGGGATGGCCAATTCGTGAGCCTGATATAATTGTGACAACACCTGCTGCCCTTCTGAATTATGTAGACACTGATAGAAGCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTCTTCGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTGATCCGCCTGCTAAACTTGCTTCGCTTTGATGAAAAGCTCTTGTCTCGTGCAAAAGAATCAAAAGGAGATTTACCAGAGAAACCAGAATCTTCCTTGTCAGCAGATGATGCTTTGGAAGATGAAGAGGAACATCCTCCTGAGGCCATGTCAGAAGAGGATGATGATACTCATGAGGATATTGTTGATACTAATAATGAAGCTAAATCTGTTAAACAAAAAGACTGGAGGAGGGTCAGGAAAACTTATAAGCGCAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCTGTTAATGGAAAGAAAACAGCTGGAGCAATGTTGAAACATATGTTTCCTGATGCTACGTGGGTTAGCGGAAACTATCTTCATTGTCACAATCCAAGGTTGGAGCAAAGATGGGTTGAAGTTACGGTCGAGTCGCAGGTTGATCAACTCATAAAGGCTGTGCGTCATCCCTTCAAGCCAACAGATCTGGATAATGCTGGTGGCATCCAGAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTGCTCCGATGTGGGATTGAGTGTTTACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCGCAGGCCTTGGTTGAATTTGAAGAGAAAGGTGGTGTTCTTGTATGCACCGATGCAGCTGCTCGTGGTGTGGATATTCCTAATGTATTACATGTTATTCAGGCAGATTTTGCTACTTCTGCCGTGGACTTTCTGCACAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTCGGACTCGTTACTAGCATGTATACTGAATCCAACAAGGAGCTTGTTCGTGCCGTTCGTCGAGCTGGAGAACTTGCTCAACCTGTGGAGGCGGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAACTCAAAAAGAGCGCAGGTGCTAGCAAAGTCAGAGATTCAGAAACTATTAAAGAGAGTGTCGTAGCATGA 1734 0.4458 MILTRSALNLMLHLHNPQTPFQFFNHRASTFLLRTTTTSLLKARFFSSTSVAATAASLSAQSSEGRDTFFAEDNVSWSSLGLSDTLSRALSNIGLSRPSLVQASSIPSVLSGKDVIIAAETGSGKTYSYLVPLFDKLRDTHEHSQHNVSDQEVPLPQKNVFLILCPNVQLCEQVVRMANSLCGDNGEPIVSVAAICGRQGWPIREPDIIVTTPAALLNYVDTDRSRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLLNLLRFDEKLLSRAKESKGDLPEKPESSLSADDALEDEEEHPPEAMSEEDDDTHEDIVDTNNEAKSVKQKDWRRVRKTYKRSKQYIFVAATLPVNGKKTAGAMLKHMFPDATWVSGNYLHCHNPRLEQRWVEVTVESQVDQLIKAVRHPFKPTDLDNAGGIQRTMVFANTVEAVEAVAKILLRCGIECLRYHKNCTLEERAQALVEFEEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNKELVRAVRRAGELAQPVEAAFSRKRSFRNKLKKSAGASKVRDSETIKESVVA* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3739 577 CDD DEADc 86 268 - -
Ahy13g3739 577 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 44 550 - -
Ahy13g3739 577 MobiDBLite consensus disorder prediction 289 314 - -
Ahy13g3739 577 MobiDBLite consensus disorder prediction 553 577 - -
Ahy13g3739 577 SMART ultradead3 94 386 IPR014001 -
Ahy13g3739 577 CDD SF2_C_DEAD 383 521 - -
Ahy13g3739 577 Pfam Helicase conserved C-terminal domain 419 512 IPR001650 -
Ahy13g3739 577 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 550 - -
Ahy13g3739 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 367 IPR014001 -
Ahy13g3739 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 524 IPR027417 -
Ahy13g3739 577 MobiDBLite consensus disorder prediction 272 328 - -
Ahy13g3739 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 560 IPR001650 -
Ahy13g3739 577 MobiDBLite consensus disorder prediction 272 288 - -
Ahy13g3739 577 Gene3D - 384 577 IPR027417 -
Ahy13g3739 577 SMART helicmild6 432 512 IPR001650 -
Ahy13g3739 577 Pfam DEAD/DEAH box helicase 101 265 IPR011545 GO:0003676|GO:0005524
Ahy13g3739 577 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Ahy13g3739 577 Gene3D - 47 365 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3739 Ahy-Chr13 136309500 136314485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3739 326 538 Eukaryotic Initiation Factors Gene Family AT5G11200 27.869 6.15e-14 72.4