LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy13g3633	ATGGAAGAAGCGTTTAGGCGTCTCAACGGCATGCCTCCGATCCAAGAACCCGACCCGATACAAGACTCAACCATCGCCGACCACCAGAAGAAAACCAACAACAAGAGGATGGCCAAGGACGCCGGTGGCGGCGGCGGCGGCTCTGCCGCGGGGCCAATGAGGTACCGCGGCGTCAGGCGGAGGCCGTGGGGGCGTTACGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCGGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCTGCCTGCGCCTACGACTGTGCCGCCAGAGCGATGCGAGGCGCGAAGGCAAGGACGAACTTCGTGTACCCTGATTCTCCTCCTCATCCTCATCCACACCATCACCATCACAATTTTCGTCACTCTGAACTGTTCGAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAGCGGCCGCCATGGCGTAACTGCTCCATTATCGACTCAGCAGCAGCACCGAAACATCGCTAACAATTCTCATCATTCCCTGAACATGCTTTTGTTCCGCGAGTTTCTGAATTCGAATCCGTGTTTGGTTTCTTCTTCTGCTGCTGCTGCTGGTGGTGTTGGTTCTAGTGGTGCTAATAATAGTCCTTATCAGTATTGCATGAAGGAGGGTGGTTCGGCTTGCTGCTTCAATGGTAACTGTTGCGTTGGTGGTTCCAACAACGGCACGACGGATGTTATTGTTGAAGGTGTCGAGGAAGAAGATCAGTCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAAACTCTGGTCTGTTGGAAGAGATAGTTCAACGCTTCTTGCCGAAATCCAAAACCGTTCCAAACAAGAATTGCGACAGCACTTTGAAGCTGAAACCCGAGGCAGCGGCAGTTTCGTTTCCTCATCATCAACAACAACAACAACAGGGCTATGATGATGACAGCAGGATGATGAGGGGTTTTGATCATCAAAATTTTCCTGTTCAGCAATTTGATTATGGCTTTAACCCTATTCATGAGGCCTCATCGATGACCATGCCTGTGGGGAACGAACAGTTGATGATGAACCCTACTGCTATGCTGGAAGATGCTTTTCAGTATCAACAATTTCTGAATGCCTTTGCGGCCAGAATGCAGAATGCTTAA	1155	0.5186	MEEAFRRLNGMPPIQEPDPIQDSTIADHQKKTNNKRMAKDAGGGGGGSAAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARTNFVYPDSPPHPHPHHHHHNFRHSELFEAFNFPKQQCHVSKLVQSGRHGVTAPLSTQQQHRNIANNSHHSLNMLLFREFLNSNPCLVSSSAAAAGGVGSSGANNSPYQYCMKEGGSACCFNGNCCVGGSNNGTTDVIVEGVEEEDQSLLELFPRESSNSGLLEEIVQRFLPKSKTVPNKNCDSTLKLKPEAAAVSFPHHQQQQQQGYDDDSRMMRGFDHQNFPVQQFDYGFNPIHEASSMTMPVGNEQLMMNPTAMLEDAFQYQQFLNAFAARMQNA*	385

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy13g3633	384	MobiDBLite	consensus disorder prediction	23	37	-	-
Ahy13g3633	384	PRINTS	Ethylene responsive element binding protein signature	55	66	IPR001471	GO:0003700\|GO:0006355
Ahy13g3633	384	PRINTS	Ethylene responsive element binding protein signature	77	93	IPR001471	GO:0003700\|GO:0006355
Ahy13g3633	384	MobiDBLite	consensus disorder prediction	1	54	-	-
Ahy13g3633	384	SUPERFAMILY	DNA-binding domain	54	111	IPR016177	GO:0003677
Ahy13g3633	384	ProSiteProfiles	AP2/ERF domain profile.	54	111	IPR001471	GO:0003700\|GO:0006355
Ahy13g3633	384	Pfam	AP2 domain	54	103	IPR001471	GO:0003700\|GO:0006355
Ahy13g3633	384	Gene3D	AP2/ERF domain	53	112	IPR036955	GO:0003700\|GO:0006355
Ahy13g3633	384	CDD	AP2	54	110	IPR001471	GO:0003700\|GO:0006355
Ahy13g3633	384	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	1	384	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy13g3633	Ahy-Chr13	134949195	134950842	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy13g3633	1	281	AP2-EREBP Transcription Factor Family	AT1G12980	37.102	6.80e-42	148

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Ahy13g3633		AP2	5.40E-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy13g3633	-		-	ahf:112736058	713.375

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