Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3599 ATGACTATGCAACTCTGCTTCTTCTTCTTCTTCTTGTTGTTGCTTGGTGCCTCCTCTTCTGATAAGACAACATTAAGAAAAGGTTTAAGGGGGAGAAACAGCATGCAGACACCATCATCTTCCGATTTTGCAGTCAAGCTTAATGAAAAAAGCCATCAGCAGTTGGTGGTTGATAATGGCATTGTTTCGGTAACTTTGTCAATACCGGAAGGCTATATCATTGGTATATCTTATAACGGAATTGAGAATGTACTTGAACCTCAAAATGAAGACCAAGATAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAAAACCCAGTACCTTTCAAAGAATCCACGGAACAAATTTTTCGGTTATAGCTTCTGACGAGAATACGGTGGAGCTTTCATTTTTAAGGACATGGACAACTTCGATGGAGGGCTCAAATGTCCCCATTAATATAGACATAAGGTACATTTTGCGAAGAGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGGCCTGATGAAGGATTTCCAGGTGTTGAGGTTGATCAAATTAGATTTGTTTATAAGCTCCTGAAAGATAGGTTCAGCTATATGGCTCTATCTAGTACAAGACAAAGAACCATGCCAACAATGAGAGACAGAGAAATGGGACAAACTCTGGCTTACCCTGAAGCTGTTCTCTTAACGAAACCAAGCAACCCTCAATTTAGAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACAGTGAAAACAACGTTCATGGATGGATTAGCCTTCAACCTGATGAATCCGTGGGTTTCTGGATGATTACTCCTTCCAATGAGTTCCGCAATGGTGGCCCCATCAAACAAGACCTCACTTCTCACGTTGGCCCCTTCACTCTTTCCATGTTTGTCAGCACTCACTATGCCGGCAAAGAAGTAACCATGTCTTTCCAACAAGGCGACACTTATAAAAAGGTTTTTGGACCTGTTTTTCTCTATCTTAACTCTGCTTCAATCTCCGATGATCCCTTGTCTCTCTGGTCAGATGCTATTAACCAGCTCTCCAAAGAAGTCAAAGCCTGGCCTTACGATTTTCCACTATCACCAGATTACTTTCCACCCGATCAACGAGGAACAGTGTTAGGAAGATTGTTAGTCCAAGATTGGTGTGTTAAGGGTGGGAGATTGCAGTATGCTAACAATGCTTATGTTGGCCTAGCATTACCTGGAGATGCAGGATCATGGCAGAAAGAGAGCAAGGGTTACCAATTTTGGACTCAAGCTGACTCCAAAGGATACTTTGCAATTAAAAATGTTGTACCTGGGGATTATAACTTGTATGCTTGGGTACCTGGCTTTCTTGGTGATTACAAATATAATTCTACAATCATAATAACACCAGGAGGAGTCATCAAATTGGATCAACTTGTATATAGTCCTCCTAGAAATGGACCAACCATATGGGAAATTGGTATCCCAGATAGAACAGCCGTAGAGTTCTACGTACCAGATCCTTACCCTACTCTCATGAACAAATTATACACTGAACAACGCAAAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATTCTGACATGTATCCAAATGAAGATCTTGTTTTCACTGTTGGTGTCAACAAGTACAATAGAGATTGGTTTTATGCCCATGTTACAAGGAATATGGGGAATAAGACATACGAACCAACAACGTGGCAAATTATATTTGAACATCGCAATGACATAATAGAAGGGAACTACACACTACAATTAGCCCTAGCATCTGCTGCTGATGCTGAACTTCAGGTTCGGTTCAATGATCCAAGTGTTTATCCTGCCCACTTTGGAACAGGGCCAATAGGAGGAGACAATGCCATAGCAAGACATGGAATCCATGGATTGCATAGGCTGTATAGTATTGATGTGCCTAGTCATCATTTTGTGAAAGGAAAGAATATCATTTATCTAAGACAATCTAGAGCTATAAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAAATCCAACCAATTGA 2040 0.4054 MTMQLCFFFFFLLLLGASSSDKTTLRKGLRGRNSMQTPSSSDFAVKLNEKSHQQLVVDNGIVSVTLSIPEGYIIGISYNGIENVLEPQNEDQDRGYFDVVWNEPGKPSTFQRIHGTNFSVIASDENTVELSFLRTWTTSMEGSNVPINIDIRYILRRGDSGFYSYAIFDRPDEGFPGVEVDQIRFVYKLLKDRFSYMALSSTRQRTMPTMRDREMGQTLAYPEAVLLTKPSNPQFRGEVDDKYQYSCENSENNVHGWISLQPDESVGFWMITPSNEFRNGGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMSFQQGDTYKKVFGPVFLYLNSASISDDPLSLWSDAINQLSKEVKAWPYDFPLSPDYFPPDQRGTVLGRLLVQDWCVKGGRLQYANNAYVGLALPGDAGSWQKESKGYQFWTQADSKGYFAIKNVVPGDYNLYAWVPGFLGDYKYNSTIIITPGGVIKLDQLVYSPPRNGPTIWEIGIPDRTAVEFYVPDPYPTLMNKLYTEQRKDKFRQYGLWERYSDMYPNEDLVFTVGVNKYNRDWFYAHVTRNMGNKTYEPTTWQIIFEHRNDIIEGNYTLQLALASAADAELQVRFNDPSVYPAHFGTGPIGGDNAIARHGIHGLHRLYSIDVPSHHFVKGKNIIYLRQSRAINQFQGVMYDYIRLERPPNPTN* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3599 679 Pfam Polysaccharide lyase family 4, domain III 482 671 IPR029411 -
Ahy13g3599 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 675 - -
Ahy13g3599 679 CDD RGL4_M 372 469 IPR029413 -
Ahy13g3599 679 Pfam Polysaccharide lyase family 4, domain II 396 468 IPR029413 -
Ahy13g3599 679 Pfam Rhamnogalacturonate lyase family 41 239 IPR010325 -
Ahy13g3599 679 SUPERFAMILY Galactose-binding domain-like 479 672 IPR008979 -
Ahy13g3599 679 Gene3D - 369 470 - -
Ahy13g3599 679 Gene3D - 479 672 - -
Ahy13g3599 679 CDD RGL4_C 484 672 - -
Ahy13g3599 679 CDD RGL4_N 54 334 - -
Ahy13g3599 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 675 - -
Ahy13g3599 679 SUPERFAMILY Starch-binding domain-like 367 471 IPR013784 GO:0030246
Ahy13g3599 679 SUPERFAMILY Galactose mutarotase-like 51 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ahy13g3599 679 Gene3D - 44 350 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3599 Ahy-Chr13 134418643 134425714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3599 55 676 Polysaccharide Lyase AT1G09910 55.929 0.0 714