Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3562 ATGCAAATCTCACTATCTACTATACTCGCCATCTTCTCCATCACACTAGTAATTCTCACTTCACCATCCACCTCTCTCTACTATTCTCCTTCACCTCCGGCGGCGCCGTTTAACTCTTCTTCCCATTCTTCTCACTTTTCTCCTCCTTATGCGGAATGGCTGTCCGCACACGCCACCTACTACACCCCCGCCAATTCCACCGACGCGCTTGGAGGCGCCTGCGGCTACTCTGACGGCACTGGTGCGGCGGCCGCGGCGATCCTCAGCCACGCGGTGTTTGAGCAGGGGCAGATCTGTGGTGCGTGCTTCGAGCTGCGGTGTGCCGAGGAGGATTCTCCGTTCGACCGTCGGTGGTGCATCCCCGGAAGGTCGGTGATGGTAACGGCGACGGACTTCTGTGCACCTAATTACGGGGTCGACGCCGACGAGGAGAGTGGCGGCGGGAGGTGCAACCCTCCGAAGCAGCACTTCGTGGTCCCCATTGACACCTTCGAGAAGATCGCGATCTGGAAGCAAGGGAACCTGCCGGTACAGTATCGGAGGATAAAGTGCAGAAGGGAAGGAGGAATCCGATTCACGATCGCTGGTTCTGGGATCTTCATTTCTGTGCTGATCAGCAATGTGGCTGGGACAGGAGACATTGTTGCCGTGAAGGTTAAGGGTTCAAGAACTGGCTGGCTTCCTATGGGGAGGAACTGGGGCCAAAACTGGCATGTAAGCGCCTTACTACAGAACCAACCTCTTTCTTTCGAGGTTACTGCCAGTGATGGTGTCACACTTACATCTTACAATGTTGCTCCCAAGCATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTGA 852 0.5493 MQISLSTILAIFSITLVILTSPSTSLYYSPSPPAAPFNSSSHSSHFSPPYAEWLSAHATYYTPANSTDALGGACGYSDGTGAAAAAILSHAVFEQGQICGACFELRCAEEDSPFDRRWCIPGRSVMVTATDFCAPNYGVDADEESGGGRCNPPKQHFVVPIDTFEKIAIWKQGNLPVQYRRIKCRREGGIRFTIAGSGIFISVLISNVAGTGDIVAVKVKGSRTGWLPMGRNWGQNWHVSALLQNQPLSFEVTASDGVTLTSYNVAPKHWTFGQTFEGKQFES* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3562 283 SUPERFAMILY PHL pollen allergen 186 278 IPR036749 -
Ahy13g3562 283 PANTHER EXPANSIN-A13 35 282 - -
Ahy13g3562 283 SMART dpbb_1 85 179 IPR007112 -
Ahy13g3562 283 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 199 278 IPR007117 -
Ahy13g3562 283 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 189 IPR007112 -
Ahy13g3562 283 Pfam Lytic transglycolase 87 179 IPR009009 -
Ahy13g3562 283 SUPERFAMILY Barwin-like endoglucanases 48 207 IPR036908 -
Ahy13g3562 283 Pfam Expansin C-terminal domain 190 267 IPR007117 -
Ahy13g3562 283 Gene3D - 190 281 IPR036749 -
Ahy13g3562 283 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Ahy13g3562 283 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Ahy13g3562 283 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Ahy13g3562 283 PRINTS Expansin/Lol pI family signature 172 188 IPR007118 GO:0005576
Ahy13g3562 283 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Ahy13g3562 283 Gene3D - 37 185 IPR036908 -
Ahy13g3562 283 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Ahy13g3562 283 PRINTS Expansin signature 264 280 IPR002963 GO:0009664
Ahy13g3562 283 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Ahy13g3562 283 PANTHER EXPANSIN-A15 35 282 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3562 Ahy-Chr13 133893224 133895578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3562 52 283 Expansin Gene Family AT3G03220 68.220 1.17e-118 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3562 - - adu:107481013 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3562 13 133893224 133895578 Ahy13g3562 13 133893224 133895578 ECH