Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3488 ATGGCACTGGCCAAAGACCAAATTCTTCATGATTCAAGCATGGGAAGCAAGGTTCAAAGTTGTGTTTTCAATGAAAATAATGAGTACCACAAATCAGTGCTAGAAGAGGAAGATGGCTCACAAAGCACCAATGGGTTCAGCAATGATTCAGCTATAACCCATTCTCCTCCTCTATGTGCCAATGCCTATGCTTATAAGGCCACAAACTATCAACTTGAGGAGGAACAACAATCTCTGATTGATTTCAAAGGTAGTTGCTACAACACTTTAACACAAGTAGTTAGTGAATCTTTGCTTAACTTTGAGCAGAACAGAATGGTCCCTGGCAACAGCTACATGAAAGATGACACTAATGTTTGGGACAACAATCTGCATCATCAATGGAGTCAGATTAGTCCAAGAAGCACTTCAGAGCTGCGACCGGTGCAGGATTCAAGTTGCTTCCAGTCTTCTAGTAGTAGCTACAGCACCATAGTCAACAGTGCAAAAGAGAAGCAATTACATGGTGAGAGTTCATCATATGGTTGGCTCTACTCTCAACAAACTATACCTGCTCATAGCATCCAGGACCCTGCAGCTCAAGAACCAATATCCAAAAAGCGCATTTCAATGCAGGCTGAGAAAATGAAAGCTGCCAAGAAGCAATGCACAGATGAGAGTAAAATGCCAAAATCCAACAAGTCAGGAGCATCCAAGGATCCTCAAAGTGTTGCTGCTAAGAATAGAAGAGAGAGGATAAGTGAGCGGCTCAAGATACTACAAGAACTAGTTCCCAATGGCTCCAAAGTTGATTTGGTTACAATGCTGGAGAAAGCAATTAGCTATGTGAAGTTTCTTCAGCTTCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTTCAAGGTGGAAAAGCTCCTGATATCTCTCAAGTAAAAGAAGCCATTGATGCCATTCTTTCATCCCAAAGATCAGAGGAACAAGTTCAGCAACCTCAAAGTAGATGA 987 0.4205 MALAKDQILHDSSMGSKVQSCVFNENNEYHKSVLEEEDGSQSTNGFSNDSAITHSPPLCANAYAYKATNYQLEEEQQSLIDFKGSCYNTLTQVVSESLLNFEQNRMVPGNSYMKDDTNVWDNNLHHQWSQISPRSTSELRPVQDSSCFQSSSSSYSTIVNSAKEKQLHGESSSYGWLYSQQTIPAHSIQDPAAQEPISKKRISMQAEKMKAAKKQCTDESKMPKSNKSGASKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVKEAIDAILSSQRSEEQVQQPQSR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3488 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 289 IPR036638 GO:0046983
Ahy13g3488 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 315 - -
Ahy13g3488 328 Gene3D - 224 287 IPR036638 GO:0046983
Ahy13g3488 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Ahy13g3488 328 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 315 - -
Ahy13g3488 328 SMART finulus 236 285 IPR011598 GO:0046983
Ahy13g3488 328 CDD bHLH_AtIND_like 231 293 - -
Ahy13g3488 328 MobiDBLite consensus disorder prediction 204 242 - -
Ahy13g3488 328 MobiDBLite consensus disorder prediction 204 221 - -
Ahy13g3488 328 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3488 Ahy-Chr13 132788099 132789780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3488 74 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 47.755 2.13e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g3488 HLH 1.40E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3488 - - gmx:100810010 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3488 13 132788099 132789780 Ahy13g3488 13 132788099 132789780 ECH