Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3479 ATGAGAAAACCTTGTTGCGACAAGGAAGGTACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAACTCATTGACTACATCCACCTTCATGGCGAAGGCTGTTGGCGTTCCCTTCCAAAAGCCGCCGGCCTTCATCGTTGCGGTAAAAGCTGCCGATTGAGATGGATCAATTATTTACGACCCGACATTAAACGCGGCAACTTTGCCCCTGATGAAGAAGATCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTTATAGCGGGAAGGTTGCCAGGACGCACCGACAATGAAGTCAAGAACTACTGGAATTCTCACATCCGCAGAAAGCTCATCAACATGGGAATTGATCCAAACAACCACAAGTTATATCAAACCTCTCCTCTTCCTCACGCTGCTTCTTCCTCATCCCGCCTCAATCTTGACCTAACCATTGCTTTCCCTGCTCATTATTCTTCTTCGCCTACATTTACCCTCGCCCAAGAAGACGACGACAACAACAACAATAATCCTAAACCAACTTCTGAGAACATGGATGAATCCAACCCTACCCTTCTTTTGTTTCAATAA 582 0.4656 MRKPCCDKEGTNKGAWSKQEDQKLIDYIHLHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFAPDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLINMGIDPNNHKLYQTSPLPHAASSSSRLNLDLTIAFPAHYSSSPTFTLAQEDDDNNNNNPKPTSENMDESNPTLLLFQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3479 193 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Ahy13g3479 193 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Ahy13g3479 193 MobiDBLite consensus disorder prediction 160 193 - -
Ahy13g3479 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Ahy13g3479 193 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 133 - -
Ahy13g3479 193 SMART sant 65 113 IPR001005 -
Ahy13g3479 193 SMART sant 12 62 IPR001005 -
Ahy13g3479 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Ahy13g3479 193 Gene3D - 68 132 - -
Ahy13g3479 193 CDD SANT 68 111 IPR001005 -
Ahy13g3479 193 CDD SANT 15 60 IPR001005 -
Ahy13g3479 193 Gene3D - 13 65 - -
Ahy13g3479 193 PANTHER MYB TRANSCRIPTION FACTOR 2 133 - -
Ahy13g3479 193 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Ahy13g3479 193 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Ahy13g3479 193 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3479 Ahy-Chr13 132665174 132666040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3479 2 169 MYB Transcription Factor Family AT4G38620 59.140 1.54e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy13g3479 Myb_DNA-binding 4.50E-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3479 K09422 - tcc:18601922 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3479 13 132665174 132666040 Ahy13g3479 13 132665174 132666040 ECH