Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3449 ATGGAGTCGTCGTGGTCGTGGTCGCGGTCGATCACCGAGACTGTGAACGGGTCCCACCAATTCACTATCAAGGGTTACTCCTTGGCGAAAGGGATGGGTCCGGGCAGGCACATTATGAGCGGCACCTTCAACGTGGGTGGTTATGATTGGGCCATATACTTCTACCCTGATGGCAAGAACCCTGACGACAATTCCATCTACGTTTCGGTCTTCATAGCACTGGCCAGCGAGGGAACCGATGTCAGGGCGTTGTTCAAGCTCACGCTGCTCGATCAGACCCAGAACGGGAACCATAAAGTGCACAGTCATTTCGATCGCCCACTAGAGAGGGGCCCTTACACCATCAAGTACAGAGGCAGCATGTGGGGTTACAAACGATTCTTTAAAAGAGCGTTACTGGAAACATCAGAATATCTGAAAGACGATTGCCTTATCATGCAATGCACTGTAGGTGTTGTGAAAACCCGTCTTGAGGGTTTTAAACCGGGGCTCATTGTGCCATATTCAGACATGGGCCGAGACTTTAAGGACTTGTTGGAGTCCGAAATTGGTTTTGACATAGTTTTCAAGGTCAAGAGTGAAAGCTTCAAAGCTCATAAGTTGATACTTGCTGCCCGATCTCCTGTCTTCAGAGAGCAGTTTTCTGGAGGAGTTGGGGATCCTAGCATAGATGAAATAGTGGTTGATGATATTGAGCCTTTTGTCTTCAAGAATCTGTTAGCTGCTGCTGATCTCTATAATCTTGATCGTCTAAAACTACTGTGTGAATCAAAATTGAGTGAAAAAATCAACACTGACACTGTTGCCACAACACTTGCCCTGGCTGAGAAACATCATTGTCCGCAGCTTAAGGCGATCTGTTTAAAATTTATTGCAAATCCAGTAAACATAGGAGTGGTAATGCTGTCGGAAGCTTTTGAACATTTGAAAGAAGGTTACCCTAAGATGCTGTCGGAATTGCTCAAGACATTTGCAGCAGGAGATGATAATTCAAGCCAGCCATCAAGCAGGAAAAGAAGTGGCAGCAGAATACACCGGCAAGATTTTGTGGATGGTGCTCCTGCTGAATCTGTTAATCCAAATGGCAGGTCTCTCAGGAGGCGTACATGGTGA 1113 0.4645 MESSWSWSRSITETVNGSHQFTIKGYSLAKGMGPGRHIMSGTFNVGGYDWAIYFYPDGKNPDDNSIYVSVFIALASEGTDVRALFKLTLLDQTQNGNHKVHSHFDRPLERGPYTIKYRGSMWGYKRFFKRALLETSEYLKDDCLIMQCTVGVVKTRLEGFKPGLIVPYSDMGRDFKDLLESEIGFDIVFKVKSESFKAHKLILAARSPVFREQFSGGVGDPSIDEIVVDDIEPFVFKNLLAAADLYNLDRLKLLCESKLSEKINTDTVATTLALAEKHHCPQLKAICLKFIANPVNIGVVMLSEAFEHLKEGYPKMLSELLKTFAAGDDNSSQPSSRKRSGSRIHRQDFVDGAPAESVNPNGRSLRRRTW* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3449 370 SMART math_3 21 133 IPR002083 GO:0005515
Ahy13g3449 370 Gene3D Potassium Channel Kv1.1; Chain A 167 263 IPR011333 -
Ahy13g3449 370 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 15 155 IPR008974 GO:0005515
Ahy13g3449 370 SUPERFAMILY TRAF domain-like 13 152 - -
Ahy13g3449 370 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 238 334 IPR045005 GO:0016567
Ahy13g3449 370 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 5 240 IPR045005 GO:0016567
Ahy13g3449 370 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 238 334 - -
Ahy13g3449 370 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 5 240 - -
Ahy13g3449 370 Gene3D - 264 341 - -
Ahy13g3449 370 CDD MATH 17 150 IPR002083 GO:0005515
Ahy13g3449 370 MobiDBLite consensus disorder prediction 326 370 - -
Ahy13g3449 370 SUPERFAMILY POZ domain 167 261 IPR011333 -
Ahy13g3449 370 ProSiteProfiles BTB domain profile. 185 240 IPR000210 GO:0005515
Ahy13g3449 370 SMART BTB_4 185 295 IPR000210 GO:0005515
Ahy13g3449 370 Pfam BTB/POZ domain 175 292 IPR000210 GO:0005515
Ahy13g3449 370 ProSiteProfiles MATH/TRAF domain profile. 16 150 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3449 Ahy-Chr13 132011956 132014613 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ahy13g3449 BTB 3.70E-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3449 K10523 - gmx:100778300 572.778