Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3420 ATGGATCTCTCCAAGAAGCGTAAAACGGAACAGAACGGGGACGCTGATTCCTCGCCTTCACAACAACCTCCCCCTTCCACCTCCCTCTCCGCAGACGACATCCGCAAGATCCTGCAACCCTTCACGCAGGAGCAGCTCATCGACCTCCTCCAGTCAGCGTCCCTCCGCCACCCCGATGTCCTCGACTCTGTCCGCTCCGTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCGCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCCGCCTACGGCGACCTAGACGAAGCCATCGTCATCTTCGACAAGAACACCGGAAAATCCAAGGGCTACGGCTTCGTCACCTTCTCCCACGTCGACGGCGCTGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACGCAGCTTGCCGCCTCCGGCGGACCCGGCGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTGTTTGTAGGTAACGTCCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCATACGGTGAGGTAGAAGAAGGTCCTTTAGGGTTTGATAAGAGTAGCGGTAAATCAAGAGGGTTTGCGTTCTTCGTGTACAAGACTGAAGAAGGTGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCTGTGGATAACAAGAAAGCGAAGCCGCAGAATCCTGCTTCTGGTTTTGCAGGGGATGGTATGCATGCTCAGCAGCAACAGCAACAGCAACAGCAACCTTCTTACAATGCTCCTATGCTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGGGCATGGCAACGGATATGGGATGCAGCCTTCGGTGCCGTCGTATGGGAACCATGTTCCAGCTGCTGCTGCTGGTGTTGGTGGGTATGGGGCTACGGTTGGTGGGGGCGGTTATGGGAATTCGCAGTATGGCGGACCGGTTTCCGGCGAGTATGGCGCGAGGTTGCCTCCTACGTCCGGTGGAGTACCCTCTGGTGGGTTTATGGATGGCTCCCATTATGGTGGTTTACCCTCGTCTGCAATTCCGTCACAGCAGCCGCAGCCTGTTCCGATGCCAAGACCTGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTACTGA 1200 0.5758 MDLSKKRKTEQNGDADSSPSQQPPPSTSLSADDIRKILQPFTQEQLIDLLQSASLRHPDVLDSVRSVADRDSTLRKLFVRGLAADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKAKPQNPASGFAGDGMHAQQQQQQQQQPSYNAPMLISQYGGYAGGGGHGNGYGMQPSVPSYGNHVPAAAAGVGGYGATVGGGGYGNSQYGGPVSGEYGARLPPTSGGVPSGGFMDGSHYGGLPSSAIPSQQPQPVPMPRPAPPGGMYQGVPPYY* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3420 399 MobiDBLite consensus disorder prediction 1 30 - -
Ahy13g3420 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Ahy13g3420 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 143 IPR000504 GO:0003723
Ahy13g3420 399 MobiDBLite consensus disorder prediction 366 399 - -
Ahy13g3420 399 CDD RRM_RBM24_RBM38_like 166 241 - -
Ahy13g3420 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Ahy13g3420 399 MobiDBLite consensus disorder prediction 249 274 - -
Ahy13g3420 399 PANTHER GEO13361P1-RELATED 1 363 - -
Ahy13g3420 399 Gene3D - 2 159 IPR012677 -
Ahy13g3420 399 Gene3D - 160 276 IPR012677 -
Ahy13g3420 399 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 363 - -
Ahy13g3420 399 MobiDBLite consensus disorder prediction 14 30 - -
Ahy13g3420 399 CDD RRM_RBM24_RBM38_like 75 150 - -
Ahy13g3420 399 SUPERFAMILY RNA-binding domain, RBD 65 155 IPR035979 GO:0003676
Ahy13g3420 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 254 IPR000504 GO:0003723
Ahy13g3420 399 MobiDBLite consensus disorder prediction 260 274 - -
Ahy13g3420 399 SUPERFAMILY RNA-binding domain, RBD 162 258 IPR035979 GO:0003676
Ahy13g3420 399 MobiDBLite consensus disorder prediction 374 399 - -
Ahy13g3420 399 SMART rrm1_1 167 239 IPR000504 GO:0003723
Ahy13g3420 399 SMART rrm1_1 76 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3420 Ahy-Chr13 131558170 131561916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3420 162 307 C2H2 Transcription Factor Family AT2G19380 29.545 5.08e-13 68.9