Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3404 ATGAATTTCCATTCAAATCTTTCTCAAGCACCTGCAAGAAGTTGTTGTCTCTACTTCTATTTATTCGTCTCCTTTCTTCTCCAAGTTGAGGCTACTGCTAATGGAGACAACAAAGTCATATCTATAGGCGCAATCATCGATGTTAACTCGCGTATTGGGAAAGAACAGCTAGTAGCCATGGACATTGCAGCTCAAAGTTACAATAACACTTCAAAGACCTACAAGCTGGCTCTTCATTTTCAGAACCCCACCATGAATCCCTTAAAAGCCACTTCCATTGCTGAAGATATGATTAAAAATCAGAACGTGGAAGTGATTGTGGGAATGCAAACATGGACAGAAGCAGCTTTGGTAGCTGAACTAGGAAGCCAGGCTCAAGTTCCTGTCATATCCTTCGCAGCACCTTCTGTTAGCTCACCATTGATGGCAAATCGATGGCCTTTTTTGGTGAGGCTAGATAACAAGGGCACTGCATATTCAAAATGCATAGCAGATATAGTTCATGCTTATGGCTGGCAAAGAGTAGTAGCCATTTATGAAGATGATGGCTACGGTGGAGATAATGGTATGGTAGGTATGCTATCTGAGGCACTCCAAGATGTAGGTTCAATGATTGAGTATCGCTTAGCACTTCCATCACCTTCTTATCTGCCTGATCCTGCTGAATTTCTTCGCAACGAGCTGCTAAAGCTAATTGAAAATACGCAATCTCGGGTGTTCATTGTTCTTCCATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGTCTTGTGGATAGAGAATCAGTATGGATAATTCCAGAGAGTATAACTAATCTATTGGATTCTGTCAATAAGTCTGCTATTTCCTATATGGAAGGGGCTATAGGGATCAAGAACTACTACTCTGAAAATAGCACAGAGTATAAAGATTTTGAAGCTCAGTTCCGGAGAACATTTCACTCCAAGTATACCGAGGAAGATAACCGCAACCCAGGATTCTACGGTCTGCAAGCATATGACAGCATTAAAATTGTTGCACAAGCAGTGGACAGAATAGCCAGTCACAATAGTAGTAGCAGCAGTAGTGGGAAGACTTTACTAAGAGGAATATTGTCTAGCAAATTCCTTGGTTTAAGTGGAGAAATTCAATTTCAAGAATTGCAGCTCATGCAGAACCCTACCTTAAGGATTGTTAATATTGGTGGGAGGAGTTATAGGGAACTAGATTTTTGGAGTCTAGAACATGGATTTACCAGTAGATTAGGAGAAGGTGGAAATGATACTTCTAGGAACACAGAGGGTTTAAGTGGAGTGGTAATTTGGCCAGGGAAATTGTTGAGAGTTCCAAAAGGGTGGAATCTGCCTACTAAGGAAAATCCAATGAGAATTGCAGTGCCAGGAAGAACTTCATTTTCCAAGTTTGTCAAGGTCGATTATGGTGAGAATGGAAAGCCAAATAAATATAGTGGATTCTGCATTGAAATTTTTGATAAGGTGTTAGAACTATTGGATTATGATTTGCCATATGAGTACTATCCCATCAATGGAACCTATCCTGACCTGGTCCAACTTGTCTATAACAAGACTTATGAGGCTGTTGTTGGGGACATAACCTTACTAGCAGACAGAATGCCATTTGTAGATTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGGTAGTTCCATCAAAGTCAGATGAATCAGCATGGATGTTCCTGAAGCCTTTCACCTGGCAAATGTGGGTGGTAACTGCTGCTATCTTGTTCTACACAATGTTGGTAGTGTGGTACCTGGAGCGAGAATCAAATCCCGAGTTTCATGGCAACTGGAAGAGCCAACTTAGCACTGCACTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAAGGAGAACTTGTCTAGCAACTTAAGCCGTGTTGTGATGGTATCTTGGCTGTTTCTAGTTCTGATCCTTAACTCGAGCTACACTGCAAGTCTTTCATCGATGCTCACAGTTCAACAACTGCAACCGAATATCACAGACATCGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGCGATGGAGATTCTTTTGTTAGGACATACCTTGAGAGAGTAGAGAGGTTCAAGGTAGAAAACATCATAAATGTTAGCAGTGAATACAGCTATGTTGATGTATTCAAAAACGGCACCATAGCAGCTGCTTTTCTTGAACTCCCTTATGAAAAAGTATACATGAGTAAATACTGCAAGGGCTTCTCTGGCTCCACCCCTGCCATCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCGGTGACCAAAGATGTTTCTAAAGCGATATTGCAGCTCTTAGAACAGGGAGAAATAAAGAGTTTAGAAGAGAAATGGCTGAGCCCGATGGGAGAGTGCGCTAGCAATGTCACCACAAGCAACACAGAAAGTTTGAAGCTTGGGAGTTTCTGGATTCTGTATGTGATTTCTGGTGCAACTTCCACCATATGTTTCCTACTTTCTACCCTGCATTCATCACCTTGGAAAAGAGCGGTTACATTAGCTAAGCAGATTTGTAAAAGCAAGAAACAAAGCGAAGAAAGTGAGGCACGTGAGGATGTAACTGACATTGACAGTTCTGAGTTACAAGAAATCATAACGGTTTCTTCCTCTCCATCACACACACCAATGACAACTCCCGATCATGGAATCACGAATGCAAGATACAACTAA 2718 0.4143 MNFHSNLSQAPARSCCLYFYLFVSFLLQVEATANGDNKVISIGAIIDVNSRIGKEQLVAMDIAAQSYNNTSKTYKLALHFQNPTMNPLKATSIAEDMIKNQNVEVIVGMQTWTEAALVAELGSQAQVPVISFAAPSVSSPLMANRWPFLVRLDNKGTAYSKCIADIVHAYGWQRVVAIYEDDGYGGDNGMVGMLSEALQDVGSMIEYRLALPSPSYLPDPAEFLRNELLKLIENTQSRVFIVLPSSLDMVIHLFREASQMGLVDRESVWIIPESITNLLDSVNKSAISYMEGAIGIKNYYSENSTEYKDFEAQFRRTFHSKYTEEDNRNPGFYGLQAYDSIKIVAQAVDRIASHNSSSSSSGKTLLRGILSSKFLGLSGEIQFQELQLMQNPTLRIVNIGGRSYRELDFWSLEHGFTSRLGEGGNDTSRNTEGLSGVVIWPGKLLRVPKGWNLPTKENPMRIAVPGRTSFSKFVKVDYGENGKPNKYSGFCIEIFDKVLELLDYDLPYEYYPINGTYPDLVQLVYNKTYEAVVGDITLLADRMPFVDFTVPYAESGLSMVVPSKSDESAWMFLKPFTWQMWVVTAAILFYTMLVVWYLERESNPEFHGNWKSQLSTALWFTFSSLFFAHKENLSSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLQPNITDIEWLKKNNMKIGCDGDSFVRTYLERVERFKVENIINVSSEYSYVDVFKNGTIAAAFLELPYEKVYMSKYCKGFSGSTPAIRFGGLGFMFQKGSPVTKDVSKAILQLLEQGEIKSLEEKWLSPMGECASNVTTSNTESLKLGSFWILYVISGATSTICFLLSTLHSSPWKRAVTLAKQICKSKKQSEESEAREDVTDIDSSELQEIITVSSSPSHTPMTTPDHGITNARYN* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3404 905 PIRSF IGluLR_plant 11 902 IPR017103 -
Ahy13g3404 905 SMART GluR_14 461 797 IPR001320 GO:0015276|GO:0016020
Ahy13g3404 905 CDD GluR_Plant 458 795 - -
Ahy13g3404 905 Pfam Receptor family ligand binding region 58 399 IPR001828 -
Ahy13g3404 905 CDD PBP1_GABAb_receptor_plant 41 420 IPR044440 -
Ahy13g3404 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 840 - -
Ahy13g3404 905 SUPERFAMILY Periplasmic binding protein-like II 436 795 - -
Ahy13g3404 905 Pfam Bacterial extracellular solute-binding proteins, family 3 484 796 IPR001638 -
Ahy13g3404 905 MobiDBLite consensus disorder prediction 882 905 - -
Ahy13g3404 905 Gene3D - 469 568 - -
Ahy13g3404 905 Gene3D - 569 708 - -
Ahy13g3404 905 Gene3D - 35 160 - -
Ahy13g3404 905 Gene3D - 161 329 - -
Ahy13g3404 905 PANTHER GLUTAMATE RECEPTOR 3.4 23 840 - -
Ahy13g3404 905 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
Ahy13g3404 905 Gene3D - 723 802 - -
Ahy13g3404 905 SUPERFAMILY Periplasmic binding protein-like I 37 451 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3404 Ahy-Chr13 131399894 131403858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3404 18 835 Ion Channels AT2G29120 34.083 7.52e-152 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3404 - - aprc:113859865 1243.41