Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3397 ATGGCATCCTCGAACAGACATTGGCCAAGCATGTTTAAATCGAAGCCTTGCAACCAGTTTCAGCATGACATGGTCTCAACTACTAATGCATCTTGCCACAGATCAGCCCCTTATAATCCTATTTCAGGATTAGGATGTGATGAGAAGAGTCCAGAACCGAAGCCAAGATGGAACCCAAAACCAGAACAAATCCGGATTCTGGAGGCGATATTCAATTCTGGAATGGTGAATCCTCCAAGGGATGAGATAAGGAAGATAAGGATGCAGTTACAGGAGTACGGTCAAGTGGGTGACGCCAACGTCTTCTACTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAGCTTCGCCACCTCACTAATAATAATAATAGGAATAACAACACTCCATCACCGTCACCGCCGCCGCAGCCACAATTCATCTCAGCCACTACCAACTCATCCTCCTCCTCTTCCTCTGACAAATCATCTCCAAAGTTCGTTCCCGCTTTCACCGATGTGGTGATGCTGCTGCCTAATTCTCCAACAGCCTCTGTGAACCAGAACTACTTTCATCACAACGAAACCAATAATAACAACACTATCAATCATCTTTTGGTTCCTCCACCACTACCGATCGAACCATTCTTCCCTGTGTTCCATAATAGTAGTGGCGTGGTTGCAACTACTGAGATCTCTAATAGTGTGATGAATAATCATCAACCTCCTCATCTTGTTTATCAAGAAAACGTTGATCCTTGCACTGATCTGCTCCTTAGCGAAATCATGAGCCATGGAGGAGTAGAACCGTCCTCTAAGAGATACCATGAACAAGACAAGGCAGCGGCCACCGTCAAGATTAGGCAGCCACAACAATACATCAGCTTCTGTCCGGTTTCAACTCCTCCTCCTTCCTTCACTAACACAACCGCTACACCTATTACTGTTCCATCCCCATTTCAAGGTGGTGGTTGTGGTAGTGGTGATGCGTCAGCGGCGAAATGTACGGTGTACATAAATGACATGGCATGCGAAGTCGATGTGGGTCCCTTTAACGTGCGTCACGCTTTTGGTGATGAGGCGGTGCTTATCGATTCCTCCGGCCACACCGTTCTCACCGATGACTGGGGCGTCACCCTCCACCCTCTCCAGCATGGCTTCTCTTACTATCTCATCTGA 1158 0.4741 MASSNRHWPSMFKSKPCNQFQHDMVSTTNASCHRSAPYNPISGLGCDEKSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLTNNNNRNNNTPSPSPPPQPQFISATTNSSSSSSSDKSSPKFVPAFTDVVMLLPNSPTASVNQNYFHHNETNNNNTINHLLVPPPLPIEPFFPVFHNSSGVVATTEISNSVMNNHQPPHLVYQENVDPCTDLLLSEIMSHGGVEPSSKRYHEQDKAAATVKIRQPQQYISFCPVSTPPPSFTNTTATPITVPSPFQGGGCGSGDASAAKCTVYINDMACEVDVGPFNVRHAFGDEAVLIDSSGHTVLTDDWGVTLHPLQHGFSYYLI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3397 385 SMART HOX_1 52 119 IPR001356 GO:0003677
Ahy13g3397 385 CDD homeodomain 53 115 IPR001356 GO:0003677
Ahy13g3397 385 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Ahy13g3397 385 Gene3D - 54 119 - -
Ahy13g3397 385 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Ahy13g3397 385 MobiDBLite consensus disorder prediction 113 158 - -
Ahy13g3397 385 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Ahy13g3397 385 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 385 IPR044557 GO:0003700|GO:0050793
Ahy13g3397 385 MobiDBLite consensus disorder prediction 40 59 - -
Ahy13g3397 385 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3397 Ahy-Chr13 131314609 131317548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3397 1 124 Wox Gene Family AT2G33880 74.803 1.81e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ahy13g3397 Homeodomain 1.20E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3397 - - aip:107633725 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3397 13 131314609 131317548 Ahy13g3397 13 131314609 131317548 ECH