Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3357 ATGGACACTAGCAGGGCTGAAGGGAAGAGAACCTTGCTGAGGTACAAAGAGGAGGAGGAGGACGACGACGAGGAGGAGACTGAGGAGGAAGAGGAAGAAGACACGGTGGGTTATGGAGAAGAATATGGTGGTGGTGGGAGGAGGAAGAGGGCAATGACAGATCTCATGAGCAGCAAGAGAGGCTTCAAAGGTGGAGGAGGCTCGTCAATGGCACCGTCATGTCAGGTGGACGGCTGTGACTCTGATCTGAGCGAGGCAAAGCAGTATCATCGAAGACATAAGGTTTGTGAGTTCCATGCCAAGGCTCCTTCCGTACACATTTCAGGCCAACAACAAAGGTTTTGCCAACAATGCAGCAGATTTCATGAGCTTTCGGAGTTTGATGACTCAAAACGAAGCTGTAGGAGACGGTTGGCGGGTCATAATGAGAGGCGTCGCAAAAATGCAACTGAGTACCATGGAGAATGA 468 0.5085 MDTSRAEGKRTLLRYKEEEEDDDEEETEEEEEEDTVGYGEEYGGGGRRKRAMTDLMSSKRGFKGGGGSSMAPSCQVDGCDSDLSEAKQYHRRHKVCEFHAKAPSVHISGQQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNATEYHGE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3357 155 Coils Coil 13 35 - -
Ahy13g3357 155 Pfam SBP domain 74 147 IPR004333 GO:0003677
Ahy13g3357 155 Gene3D - 64 135 IPR036893 GO:0003677|GO:0005634
Ahy13g3357 155 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Ahy13g3357 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 150 IPR044817 GO:0003677
Ahy13g3357 155 SUPERFAMILY SBT domain 72 152 IPR036893 GO:0003677|GO:0005634
Ahy13g3357 155 MobiDBLite consensus disorder prediction 1 17 - -
Ahy13g3357 155 PIRSF SBP 2 155 IPR017238 GO:0003677|GO:0003700|GO:0009908
Ahy13g3357 155 MobiDBLite consensus disorder prediction 1 50 - -
Ahy13g3357 155 MobiDBLite consensus disorder prediction 18 38 - -
Ahy13g3357 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 18 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3357 Ahy-Chr13 130693461 130695245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3357 65 151 SBP-box Gene Family AT2G33810 71.264 3.23e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy13g3357 SBP 1.60E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3357 - - aip:107631217 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3357 13 130693461 130695245 Ahy13g3357 13 130693461 130695245 ECH
Ahy20g0431 20 4355353 4356806 Ahy13g3357 13 130693461 130695245 ECH
Ahy18g1382 18 26016464 26017843 Ahy13g3357 13 130693461 130695245 ECH
Ahy18g0917 18 11463805 11465055 Ahy13g3357 13 130693461 130695245 ECH
Ahy13g3357 13 130693461 130695245 Ahy3g3091 3 128272479 128274248 hybridization
Ahy13g3357 13 130693461 130695245 Ahy20g0431 20 4355353 4356806 PCT
Ahy13g3357 13 130693461 130695245 Ahy10g0253 10 2261111 2262384 PCT