Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3354 ATGAAGTTCAACATTGCTAATCCCACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAGCTACGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTCCTTGGTGATGCTCTTGGAGAGGAATTCAAAGGCTATGTCTTCAAAATCACCGGTGGCTGTGACAAGCAAGGATTCCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGTCTTTTGCTTCACAGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGGAGAAAGTCTGTTCGCGGGTGCATTGTCAGCCCTGATCTCTCAGTTTTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATCTTCCCGGCCTGACTGATGTTGAGAAGCCAAGGATGAGGGGGCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTCTCAAAGGAGGACGATGTGAGGAAGTATGTTAACACCTACCGCAGAACCTTTACAACCAAAAATGGCAAAAAGGTGAGCAAGGCTCCCAAGATACAAAGACTGGTGACACCTTTGACACTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAAGCAGCGGAGTATCAGAAGTTGCTTGCATCGAGGTTGAAGGAACAGAGGGAACGCCGTAGTGAGAGCTTGGCCAAGAGGAGATCCAAGCTTTCCAGTGCGGCTGCCAAGGCAACTGCATAG 747 0.4953 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAAKATA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3354 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy13g3354 248 MobiDBLite consensus disorder prediction 219 235 - -
Ahy13g3354 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 244 - -
Ahy13g3354 248 Gene3D - 133 234 - -
Ahy13g3354 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Ahy13g3354 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy13g3354 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 244 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy13g3354 248 Coils Coil 189 216 - -
Ahy13g3354 248 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Ahy13g3354 248 MobiDBLite consensus disorder prediction 219 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3354 Ahy-Chr13 130617543 130619524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3354 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.581 8.67e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3354 K02991 - gmx:100801194 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3354 13 130617543 130619524 Ahy3g3087 3 128224153 128226120 hybridization
Ahy13g3354 13 130617543 130619524 Ahy20g0436 20 4433833 4435776 PCT
Ahy13g3354 13 130617543 130619524 Ahy10g0257 10 2329433 2331789 PCT
Ahy20g0436 20 4433833 4435776 Ahy13g3354 13 130617543 130619524 PCT
Ahy10g0257 10 2329433 2331789 Ahy13g3354 13 130617543 130619524 PCT