Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3340 ATGATGCAGCTTGATGAAATCAAGACACAGCGAGAAGTAGGAGAAGACGACGATGGCCCGCCACCGGGTTGGCAACCCATCCATACGCCACCGCCACAACCGCCTCCACAGTCACAGTCACGGTCACGGTCACCACCTCGATGTCCATCCACTGATCAGGTTGGACAAGTTAAGTGTGGGGGCTGTGCAGTATTGCTAATGTACCCATATGGTGCTCCACAAGTTAGGTGTTCCTCATGTCGATTTGTGACAGAAATTGGGGCACACAACAAGCGACCTCCATGGTCTGAACAACAAAGGAAACCAACCCTACCTAAAACTGCTTGTTAG 330 0.5152 MMQLDEIKTQREVGEDDDGPPPGWQPIHTPPPQPPPQSQSRSRSPPRCPSTDQVGQVKCGGCAVLLMYPYGAPQVRCSSCRFVTEIGAHNKRPPWSEQQRKPTLPKTAC* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3340 109 MobiDBLite consensus disorder prediction 88 109 - -
Ahy13g3340 109 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 56 84 IPR005735 -
Ahy13g3340 109 MobiDBLite consensus disorder prediction 23 42 - -
Ahy13g3340 109 PANTHER PROTEIN LOL2 52 104 - -
Ahy13g3340 109 MobiDBLite consensus disorder prediction 1 54 - -
Ahy13g3340 109 PANTHER PROTEIN LSD1 52 104 IPR040319 -
Ahy13g3340 109 Pfam LSD1 zinc finger 59 83 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3340 Ahy-Chr13 130416531 130418388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ahy13g3340 zf-LSD1 7.30E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3340 - - adu:107480804 173.711