Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3338 ATGGCCTTTGATCATAACTACTATTCCCGGGGATGTAAAACTCTGCCAAATTCCCTTATAGACACAGAAAATTATAACAATTCCAATGGTTGTTTCGATTGCAACATATGCTTAGACTTTGCAAACGAGCCAGTTGTCACGCTTTGTGGCCATCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGCGCTTCCCTTGCCTACAACCAGCAGCCGCTATGCCCTGTCTGCAAAGCTGAAATATCCCATGCCACGATGGTTCCCCTCTACGGCCGTGGCCACAGCAACCGTGAAGAGAAGGCGGCCTCATGCAGGGACATTTGTGTCCCGCCGAGGCCACCTGCTTCTGGTCCCCTGTCTTTGCTGTCCATGTCTCAAAACGGCCAGCAGCGGCTTCCTTATCGGAATCCTTACCAGGGTCAACACTTTAGCGTTGCGCAAGACGAGGACAACGCATCGCAAATGCTGAATCTTGGTGCTTCTGTAACGCCGGCATTCCTCCCCCACCCTATGGTTGGAATGTTTGGGGAGATGTTCTACACCAGAGTGTTTGGCAACTCAGAAAGTTTGTATGGATACCCAAATTCTTATCACACGATGGGAAGTATTAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGATAAGTCATTGAACAGAATCTCCATTTTCCTGCTATGTTGCTTTATTCTATGTCTTATTGTCTTTTGA 720 0.4861 MAFDHNYYSRGCKTLPNSLIDTENYNNSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASLAYNQQPLCPVCKAEISHATMVPLYGRGHSNREEKAASCRDICVPPRPPASGPLSLLSMSQNGQQRLPYRNPYQGQHFSVAQDEDNASQMLNLGASVTPAFLPHPMVGMFGEMFYTRVFGNSESLYGYPNSYHTMGSISPRLRRQEMQADKSLNRISIFLLCCFILCLIVF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3338 239 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Ahy13g3338 239 CDD RING-HC_AtRMA_like 32 82 - -
Ahy13g3338 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy13g3338 239 SMART ring_2 34 80 IPR001841 -
Ahy13g3338 239 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Ahy13g3338 239 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Ahy13g3338 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Ahy13g3338 239 SUPERFAMILY RING/U-box 30 93 - -
Ahy13g3338 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 6 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3338 Ahy-Chr13 130410657 130412397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3338 22 225 C3H Transcription Factor Family AT4G27470 41.364 5.36e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3338 K10666 - gmx:100816864 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3338 13 130410657 130412397 Ahy3g3070 3 127918213 127919941 hybridization
Ahy13g3338 13 130410657 130412397 Ahy20g0462 20 4683220 4685302 PCT
Ahy13g3338 13 130410657 130412397 Ahy10g0279 10 2520374 2522350 PCT
Ahy20g0462 20 4683220 4685302 Ahy13g3338 13 130410657 130412397 PCT
Ahy10g0279 10 2520374 2522350 Ahy13g3338 13 130410657 130412397 PCT