Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3337 ATGGCGTCGCTGTTCGGTTCGTCGTCGGGCTCCACATCGATGGTGGTGACGAACACGCCGTCGCAGGACCTTGCCCTCACCAACCTCGCCTTCTGTTCCTCCTCCGATCTCCGCAACTTCGCCGTCCCCAATCGCTCCAACCTCTTCCTCGCCTTCGTTGGCGACTCCTTCGTCTTCTCTTTCTCAGCTCATGAGAACATTCGCAGTGGCCAGATTGCTCTCAATTCCATTCAACGTCGCTGTGTTAAAGTCTCCGCTGCTGAATCCATTCCTGTCACCAGATTTGTGCCACCTGAAAACTTCGACCTGGCATTGTTAACCCTTGAACTGGAATTCATTAAAAAAGGAGCAAAGAGTGAACAGATTGATGCTCCCCAACTGTCTAAGCAACTTCGGAAAAGGTTCGCAAACCAGGTTATGACAGTAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTCACAGTTACTCAAGCTGCTGTTGAGGGTCAAGAAAAGACTAATGCTCTTGAAAGAGGGATGATCTCAGATGACACATATGTTGTTTTTGAAACAGCACGTGATAGTGGAATCAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCTCTGGGTATTGGAGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCCCGTGTTTTCCCTCCCCACGTGACATCGAAATTAGGGATCAAGCATGTGAAGGGCATGTTGCTTTATGGCCCCCCTGGAACTGGAAAGACTCTTATGGCCCGGCAAATTGGGAAAATTCTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCGGATGCTGAACAAGAGCAGAGGAGCCGAGGGGATGAAAGTGATTTGCATGTAATTATCTTTGATGAAATCGATGCTATTTGTAAGTCAAGAGGTTCAACTCGCGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGATATGCTTGATGAGGCTCTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTTGCTCCCGATGTGAATCTTCAAGAGCTTGCTGCTAGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCGGTCTCATATGCTTTAAATCGACAACTGAGTCTAGAGGATCTCACGAAGCAAGTTGAGGAAGAGAATATTAAGGTTACCATGGATGACTTTTTGAATGCACTCCAAGAAGTTATTCCTGCATTTGGGGCTTCCACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTTGACTGTGGTGACCGACATAAGCACATCTATCAAAGAGCAATGCTACTAGTGGAGCAAGTAAAAGTAAGCAGAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCCAGTGGCAGTGGTAAGACCGCACTTGCAGCTACTGTTGGTATTGACAGTGACTTCCCATATGTCAAGATTGTTTCAGCTGAAACAATGATTGGACTACATGAGAGCACTAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATATAAGTCACCGTTGAGTGTTATTGTCCTTGATGACATTGAGAGGTTATTGGAGTACGTAGCCATTGGTCCCCGGTTTTCAAACTTGATTTCTCAGACACTATTGGTCCTACTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACAACAAGCGAATTGACTTTCTTGGACTCGATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTACCTTGAACACAAATGATGCCAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTCATGAAGATATTGATGCTGCTGCAGAAGCAATGAATGATATGCCTATTAGGAAGCTGTACATGTTGATTGAGATGGCAGCACAAGGGGCTCAAGGTGGATCTGCAGAAGCTATCTATTCTGGCAAAGAGAAGATCAGTATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTCAGAATATAA 2232 0.4373 MASLFGSSSGSTSMVVTNTPSQDLALTNLAFCSSSDLRNFAVPNRSNLFLAFVGDSFVFSFSAHENIRSGQIALNSIQRRCVKVSAAESIPVTRFVPPENFDLALLTLELEFIKKGAKSEQIDAPQLSKQLRKRFANQVMTVGQKVLFEYHGNNYSFTVTQAAVEGQEKTNALERGMISDDTYVVFETARDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRSRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKQVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSRGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELTFLDSIGFCDTFSVTYHVPTLNTNDAKKVLEQLNVFAHEDIDAAAEAMNDMPIRKLYMLIEMAAQGAQGGSAEAIYSGKEKISISHFYDCLQDVVRI* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3337 743 CDD AAA 254 397 - -
Ahy13g3337 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 495 IPR027417 -
Ahy13g3337 743 Gene3D - 494 665 IPR027417 -
Ahy13g3337 743 SUPERFAMILY ADC-like 11 95 IPR009010 -
Ahy13g3337 743 SMART AAA_5 532 670 IPR003593 -
Ahy13g3337 743 SMART AAA_5 252 399 IPR003593 -
Ahy13g3337 743 Gene3D - 9 95 - -
Ahy13g3337 743 PANTHER VESICULAR-FUSION PROTEIN NSF 43 742 IPR039812 GO:0016887|GO:0035494
Ahy13g3337 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 713 IPR027417 -
Ahy13g3337 743 CDD AAA 526 652 - -
Ahy13g3337 743 ProSitePatterns AAA-protein family signature. 367 385 IPR003960 GO:0005524|GO:0016887
Ahy13g3337 743 Gene3D - 398 485 - -
Ahy13g3337 743 Gene3D - 99 196 - -
Ahy13g3337 743 Pfam Cell division protein 48 (CDC48), domain 2 121 166 IPR004201 -
Ahy13g3337 743 PANTHER VESICULAR-FUSION PROTEIN NSF 9 39 IPR039812 GO:0016887|GO:0035494
Ahy13g3337 743 PANTHER BNAA03G50350D PROTEIN 9 39 - -
Ahy13g3337 743 PANTHER BNAA03G50350D PROTEIN 43 742 - -
Ahy13g3337 743 Pfam ATPase family associated with various cellular activities (AAA) 256 396 IPR003959 GO:0005524|GO:0016887
Ahy13g3337 743 Pfam ATPase family associated with various cellular activities (AAA) 537 650 IPR003959 GO:0005524|GO:0016887
Ahy13g3337 743 Gene3D - 205 397 IPR027417 -
Ahy13g3337 743 Pfam AAA+ lid domain 423 478 IPR041569 -
Ahy13g3337 743 SUPERFAMILY Cdc48 domain 2-like 98 201 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3337 Ahy-Chr13 130390437 130398130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3337 247 463 Calmodulin-binding Proteins AT3G56690 39.819 9.30e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3337 K06027 - gmx:100779259 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3337 13 130390437 130398130 Ahy3g3069 3 127901770 127909417 hybridization