Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3330 ATGTACGTTAATTCCATGAGAAAGTCCTTCAAGGACTCCCTCAAGCTCCTTGAAGCTGATATTCAACACGCCAATACCCTGGCGTCAGATTTTTCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTCTTTCTTTTTTTGGTGCAATGGACTGATTGTCACCTTGCGGGAGCCCTGGGATTGTTGAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACCACCATGTCTACCCAGGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCTTTGTTGCAACTTCAAAAGGGGGTCACTGATACGGAGGATAAGAAACAAAAGGCTATGTGCATGGAGAGGTATCGTAAAAGAGATGATGAGGAGTATTGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAAATGAATGGCAAAGTTGTGTTGCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATCTCTCAGTCATGCCCATTTTGCCGAGACAGTCTGAAGAGGGTAAACTCTGGCGATCTCTGGGTTTTCACTGACAGGAGAGACATAGTAGATATGGCAACAGTAACAAGGGAGAATCTTAGAAGGCTTTATATGTACATAGACAAGTTGCCTTTGGTTGTTCCGGACTCCTTTTTTGAGGCCTATGACTCTCACATAAGGTAA 744 0.4382 MYVNSMRKSFKDSLKLLEADIQHANTLASDFSREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTQERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAMCMERYRKRDDEEYWQSSDIDIEREDECGICMEMNGKVVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDIVDMATVTRENLRRLYMYIDKLPLVVPDSFFEAYDSHIR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3330 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Ahy13g3330 247 SUPERFAMILY RING/U-box 138 194 - -
Ahy13g3330 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 246 - -
Ahy13g3330 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
Ahy13g3330 247 SMART ring_2 151 188 IPR001841 -
Ahy13g3330 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Ahy13g3330 247 PANTHER RING FINGER PROTEIN 41, 151 4 246 - -
Ahy13g3330 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3330 Ahy-Chr13 130347470 130351173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3330 K25840 - gmx:100777318 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3330 13 130347470 130351173 Ahy3g3060 3 127851983 127855712 hybridization
Ahy13g3330 13 130347470 130351173 Ahy20g0472 20 4805876 4808560 PCT
Ahy13g3330 13 130347470 130351173 Ahy10g0289 10 2571409 2574100 PCT
Ahy20g0472 20 4805876 4808560 Ahy13g3330 13 130347470 130351173 PCT
Ahy10g0289 10 2571409 2574100 Ahy13g3330 13 130347470 130351173 PCT