Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3320 ATGATTTACCCACCGTTTCTTGCCATTCCTCAGTCGTCTTCTTCTTTTTGTGCTCCGCTATTCACCTTCATCGTTGGCAAAATTGAGGGAACCTTAAAAGATGGGAGACAAGTAGCAGTGAAGACCCTTTCAGCTGGGTCAAGGCAAGGAGTTCGTGAATTTTTAACTGAGATTAAAACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGGTCGGTTGCTGTGTTCAAGGACCTAATCGTATACTAGTCTATGAGTATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCACAAGGAGTATAAACATCAGACTAGACTGGAGAAAAAGATCTATTATTTGCATGGGCACTGCAAGGGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATCGTGCACAGAGACATCAAAGCCAGCAACATACTACTCGACACAGACTTTAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTGTTTCCTGATGACATCACTCATATTAGCACAAGAATTGCTGGAACAACTGGTTACTTGGCGCCTGAATATGCAATTGGTGGCCAGTTAACCCTGAAGGCTGATGTATATAGTTTTGGGGTTCTTATACTTGAAATAGTTAGCGGCAGAAGCAGTTCAAGGACAAACTGGGGAGACTCATACAAACTCCTCTTGGAATGGGCATGGCAACTCCATGAAGAGGGGAAGTTGGTGGAGCTTGTGGATCCAGAAATGGGAGAGTTTCCTGAGGAAGAGGTGATTAGGTACATGAAGGTAGCATTCTTCTGCACACAAGCAGCTGCAAGCAGAAGGCCAATGATGTCACAGGTTGTTGATATGCTGTCCAAGAAAACAAAGCTCAATGAGAAGCAACTCACAGCACCAGGTTTCTTCCAAGACTCAGGAGAGTCCTCTCTAAAGAAGTCTTCTGGTGAGTCCACAAGCTATCAGTTTAGCTCTACCCCTGCCAGTATTACTCAGGTCAACCCCCGGTAA 1002 0.4361 MIYPPFLAIPQSSSSFCAPLFTFIVGKIEGTLKDGRQVAVKTLSAGSRQGVREFLTEIKTISNVKHPNLVELVGCCVQGPNRILVYEYVENNSLDRALLGTRSINIRLDWRKRSIICMGTARGLAFLHEELVPHIVHRDIKASNILLDTDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAIGGQLTLKADVYSFGVLILEIVSGRSSSRTNWGDSYKLLLEWAWQLHEEGKLVELVDPEMGEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKKTKLNEKQLTAPGFFQDSGESSLKKSSGESTSYQFSSTPASITQVNPR* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3320 333 CDD STKc_IRAK 30 285 - -
Ahy13g3320 333 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 326 - -
Ahy13g3320 333 ProSiteProfiles Protein kinase domain profile. 1 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g3320 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Ahy13g3320 333 PANTHER - 30 326 - -
Ahy13g3320 333 Gene3D Phosphorylase Kinase; domain 1 26 89 - -
Ahy13g3320 333 Gene3D Transferase(Phosphotransferase) domain 1 90 301 - -
Ahy13g3320 333 Pfam Protein tyrosine and serine/threonine kinase 33 283 IPR001245 GO:0004672|GO:0006468
Ahy13g3320 333 SMART serkin_6 23 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy13g3320 333 MobiDBLite consensus disorder prediction 295 333 - -
Ahy13g3320 333 SUPERFAMILY Protein kinase-like (PK-like) 32 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3320 Ahy-Chr13 130211857 130216183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3320 29 321 Receptor kinase-like Gene Family AT1G56120 53.691 3.82e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ahy13g3320 PK_Tyr_Ser-Thr 8.10E-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3320 - - gmx:100788143 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3320 13 130211857 130216183 Ahy3g3054 3 127716376 127720693 hybridization
Ahy13g3320 13 130211857 130216183 Ahy20g0479 20 4892767 4895962 PCT
Ahy13g3320 13 130211857 130216183 Ahy10g0296 10 2677898 2680452 PCT
Ahy20g0479 20 4892767 4895962 Ahy13g3320 13 130211857 130216183 PCT
Ahy10g0296 10 2677898 2680452 Ahy13g3320 13 130211857 130216183 PCT