Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3297 ATGGTGGTGGAAGAGAGTGGGAATCATAGCGGCAGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGGATGCCGGTGAAGAATCTCATGGCCGAGAGGTGGCACAGGAAGAAGCTTAATGATAGGTTGTACATGTTTAGGTCTATTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCAACTGCTTGAGGGAGTTACTGCAGCAGATTAATGATCTTCACAATGAACTGGAGTCAACTCCACCTGGTTCTTCGCTGCAATCTTCCACCACCATCCTTCAAACTTTAACACCCACGCCGCAAACCCTTCCATGCCAGGGGAAGGAGGAACTGTATCCTGGTGTCTTGCCATGCCCCAACACCAACTTGCAAAGTGTTGATGATGGATTTCCACTTGTCACTTTCTATTTTGAAATGGACTCTCTTTGA 480 0.4729 MVVEESGNHSGRGNGNLSLSGGVNGGDQKGKKKGMPVKNLMAERWHRKKLNDRLYMFRSIVPKISKMDRASILGDAINCLRELLQQINDLHNELESTPPGSSLQSSTTILQTLTPTPQTLPCQGKEELYPGVLPCPNTNLQSVDDGFPLVTFYFEMDSL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3297 159 Pfam Helix-loop-helix DNA-binding domain 41 83 IPR011598 GO:0046983
Ahy13g3297 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Ahy13g3297 159 PANTHER BHLH TRANSCRIPTIONAL FACTOR 10 139 - -
Ahy13g3297 159 Coils Coil 77 97 - -
Ahy13g3297 159 CDD bHLH_AtAMS_like 38 108 - -
Ahy13g3297 159 MobiDBLite consensus disorder prediction 9 23 - -
Ahy13g3297 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 98 IPR036638 GO:0046983
Ahy13g3297 159 Gene3D - 28 98 IPR036638 GO:0046983
Ahy13g3297 159 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 139 - -
Ahy13g3297 159 MobiDBLite consensus disorder prediction 1 34 - -
Ahy13g3297 159 SMART finulus 40 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3297 Ahy-Chr13 129859033 129862122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3297 35 136 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 74.510 6.39e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g3297 HLH 8.10E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3297 - - ahf:112733441 275.018