Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3292 ATGATCATGGTGGATAATAGCACAGATTCATCATCAGGAGCGGGTGAACAGCATCATCACCCTCAGCTTCCTCCAGGCTTTCGATTCCACCCCACAGACGAAGAACTCGTCGTTCACTACCTTAAAAAGAAAGCTTCTTCTTCACCACTCCCTGTCGCCATCATCGCCGACGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGGGATCAAGAGTGGTACTTTTTCAGTCCTCGGGATAGGAAGTACCCGAATGGAGCTCGGCCAAACAGGGCGGCTACTTCTGGGTATTGGAAAGCCACCGGAACGGATAAGCCTATTCTGTCTTCTGATGGGAACAAGCAGAAAGTTGGAGTCAAGAAAGCGCTTGTTTTTTATGGTGGCAAGCCTCCCAAAGGCGTCAAAACCAATTGGATTATGCATGAGTATAGGCTCACCGATAACAATAACAATGCTTCTTCTTCTAATTCATCTAAGCCTCCTTCTATCCCTCTTGATCCACTCAAGAAGACTTCTCTCAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAGAGCAACAGCAGTAGTAGCAGCCTTCCAATTCCAAGGCCAGCGTTTTTAATGGATGAAGAGAAGGATCTAATTTCCATGGAGAGCAGCATGGTGCCAACTATGTCAATGTCAAAACCAAGAAGCACTTCAACAACAGGTTGTTATGGACCCATGGCACTTGAAAACGATGACAACTTCTTCGATGGTATATTGGCAGCATCAACCGATCATCACACCATGCAAAATGGGTCTCCAGGGTCCTCATCTTCAAGCAAGAGATTCCATGGTGATCTTAATAATGGAGACAACACCTCCTTCGTTTCTCTTCTTAACCAGCTTCCTCACAACACACCCTTTCACCCAAACTCCATTCTTGGCTCCGTTGGAGACGCCGTCTTGAGGCAACAATTTCAACTTCCAGGCTTAAATTGGAACTAA 993 0.4612 MIMVDNSTDSSSGAGEQHHHPQLPPGFRFHPTDEELVVHYLKKKASSSPLPVAIIADVDLYKFDPWELPSKAAFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGNKQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDNNNNASSSNSSKPPSIPLDPLKKTSLRLDDWVLCRIYKKSNSSSSSLPIPRPAFLMDEEKDLISMESSMVPTMSMSKPRSTSTTGCYGPMALENDDNFFDGILAASTDHHTMQNGSPGSSSSSKRFHGDLNNGDNTSFVSLLNQLPHNTPFHPNSILGSVGDAVLRQQFQLPGLNWN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3292 330 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 276 - -
Ahy13g3292 330 MobiDBLite consensus disorder prediction 261 282 - -
Ahy13g3292 330 MobiDBLite consensus disorder prediction 155 174 - -
Ahy13g3292 330 Pfam No apical meristem (NAM) protein 24 151 IPR003441 GO:0003677|GO:0006355
Ahy13g3292 330 Gene3D NAC domain 32 197 IPR036093 GO:0003677|GO:0006355
Ahy13g3292 330 MobiDBLite consensus disorder prediction 1 17 - -
Ahy13g3292 330 ProSiteProfiles NAC domain profile. 23 192 IPR003441 GO:0003677|GO:0006355
Ahy13g3292 330 PANTHER NAC TRANSCRIPTION FACTOR 56 6 276 - -
Ahy13g3292 330 SUPERFAMILY NAC domain 18 192 IPR036093 GO:0003677|GO:0006355
Ahy13g3292 330 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3292 Ahy-Chr13 129792073 129793948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3292 4 330 NAC Transcription Factor Family AT1G61110 56.977 1.72e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy13g3292 NAM 2.50E-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3292 - - gmx:100792372 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3292 13 129792073 129793948 Ahy3g3030 3 127244135 127245722 hybridization
Ahy13g3292 13 129792073 129793948 Ahy20g0495 20 5058449 5060346 PCT
Ahy13g3292 13 129792073 129793948 Ahy10g0311 10 2874771 2876506 PCT
Ahy20g0495 20 5058449 5060346 Ahy13g3292 13 129792073 129793948 PCT
Ahy10g0311 10 2874771 2876506 Ahy13g3292 13 129792073 129793948 PCT