Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3289 ATGGCGGATGATGACGTGAACTTTTCGGAACTGTTCGATGGTGACGATGACGATAATATGTGCTATATCGATTTAACGACGGTGATGCAGGTTCTCAATGAGGATGACGACCCTCTGCAGCAGAGTAGTCCTGAAGATTTTTCATTACAAAATGGTTCATCTGGTGAATCTGGCGTCCATGATTCTTTTCAGCTTCAGAATGTTTGTCAAATGTTAGAAGAAGAACCACATGTTTCTAGGTTGGAGGTGGATTCAGCCACAGACTGCTCTCCTTTCTGCTCAGATGTGTCGGATTCTGGGGCCAAAGATTCAGTTCATTTTTCAGCGAATCCTGTGCTTGAGCGTGAACATGAAAATCAGGGACTTCCAAGTCAGGCTTGCTCTTCCACGGAAAAGACAGGGCTTTCTAAATTTGAGACATCTAGTTTTGGTATGGAAACTAGTTTCCCTGAGGCATATTCAAATAATGTATCAGTCTGTCAGGACTATTTGAATAAGAGTATGTGGAAGAGTGGAAATGAGAGGCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCTCACAGTTCTATCATTGAGAATGGTGATTTAAATTTTGAAGATTGTGTTGAGGATGCTGTTCGAGGTGCTTATGGGCAACAAGAAAGTGACTTGTGCACATCTTTTCAAATATCTGATATGGAAGCTGATGATTCTTTGCATGCTTCAACTTCAATTGATTCTGCTCTTTATCAAGGTTCCCATTTTCCTAGCGATTTGTGTGGTGACTATGCATATCCAAATTATCATCAGGGAGGAACATATGATAGATCGTTTGCCAATGACCCAACTTTAAGGTTTATCCCTAATGGTATCGGTTCCAAGTCATGGACAAATAAAGAAATGATGACTAACCTGAAGGCTGAAAATATGGAGTTCTGTACAGATATGGCCCAAATCAGTGGTGGCATGCACTCAGTTAATACTGGGGGATCATCTATTCATGATAGTCAATTTACGCTAGCAGATAGTGGCTATTCATCATATTTTTCTGGTAACAGTGCTTTTGAAGATGGGGTGTCAGTTGCACTTTCAACTTATGCTTCACATGGAGATCAATCACTTTGTATGAAAGCTGAAGGGGACAAACTGGTTACAAGTTACCAAAATAATTTTCAGAACAATGATGCTCAGTTCAATATTGGCCAGGAGGTGAAACAGTTACCAGATCTTTTTCCTTCTGTGAAATGTAAGAGTTATGGATCTTTCCCATGTGAGGATAGTTATACAGTAATAACTTCTGATAGAGCCAATCATTATCAAGATACTATTAATGGAACTGCTAGTAAACTTCAAAGAAACATGGTCTATTTGACTGTAGACCAATGTTTGCCCCATGCCCATGCTTCCATTGCCGTTGAGCAGCAGTTTGGTTGTGTTAAGAGAGGAGGGACCGAAATGATTCAACATAACCGCATTGATTCTCATCATTCTAAACGAACTGCTGAGAATTTCCGTGTTGAGGACACTGATGTTTGTATCATTGAAGACAACAGTCATCCTGTGCCTACAAGTCAATCTGAAGCTGTTCGTAATTCCCTTAGTATATTTCAATCTTCCGGATATGTTGGTTCCCAACATTACGCGGTTGGAAGCACAAGGGTAAAGGCATGTGATGAGCGAAATATATTACAAGTTGCATTGCAGGATCTATCTCAACCAAAGTCAGAAATTAGTCTGCCAGTTGGATTGTTGGCGGTTCCTCTTTTGAGACATCAGAGAATTGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGCTTATATTGCTCAGGTGGAATACTTGCAGATGATCAGGGACTTGGGAAAACGGTGTCAACTATTGCTTTAATATTGAAGGAAAGGCCTCCAAAATTATCTGCATGCCCCAATGCCCAAAATGGTGAATTGGAAACTTTGAATCTGGATGGAGAGGATGATGGTCTTCCTCAGAGCAGTTTGTTAAAGAAGGAATCTGATTCATGCGGAGACATGTCAATTAGAGATCCAATCAAGAGCAAGAGTTTATCTTTGCAAACAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTCTGCCCCACTAGCGTCCTGCGTCAATGGGCTGAGGAGTTGCACAATAAGGTAACTAGCCAAGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGAACGAAAGACCCTCATGAGGTGGCCAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTCCCTAAACAGCCGCTAGCTGACAAAGAAGATGAAGAGAAGGGAATATTTGAAGATTCTGGGGTACCAAATAGGAAGAGGAAAAACCCTTCTAATTCTAGTAAAAGTGGCAAGAAGCGATTGGACAACGCATTGCTTGAGGCTGCTGCTCGCCCTCTTGCAAAGGTATCATGGTTTAGGGTTGTCCTGGATGAGGCTCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTCGGGTCTTCGTGCTAAGCGCAGATGGTGTTTGTCAGGGACCCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTGAGATATGCCCCTTATGACATTTATACATCATTCTGTTCTATGATTAAGAATCAGGTCAGCAGAAATCCTACAAAAGGGTATAAAAAGATACAAGCCGTCCTAAAGACAATAATGCTACGTCGGACCAAAGGAACATTTCTTGATGGGGAGCCTATTATATCCTTGCCACCTAAATTTGTAGAGCTTAAAAAAGTTGAGTTTTCAATGGAGGAGCGTGATTTCTATTCCAAACTGGAGGCTGATTCTCGTGCGCAGTTTCAGGAATATGCTGATGCTGGAACTGTAAAACAAAATTATGTCAACATTTTGCTTATGCTTTTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTTAAGCGTTACAATTCCAACACTCTATGGAGATCTTCTGTCGAGATGGCAAAAAAGCTTCCCCAGGAAAAACAAGTATCCCTTCTTAAGTGTTTGGAGGCTTCCCTGGCTCTCTGTGGAATCTGTAATGATCCTCCTGAAGACGCCGTTGTTTCAGTCTGCGGTCATGTCTTCTGTAGCCAGTGCATTTCGGAACATCTTACCGGTGATGACAATCAGTGTCCTGCTGCAAATTGCAAAAGTCGACTCAGCATGTCTACTGTTTTTGCGAAAGCGATGCTCAACGGTTGTATGTCTAACCAGGGTTGTGATAGTTCACCTGGTTCGTCTGGTTCTGAAGTGGATGAATCTGAGCCTTGGTCTCGGAGTCAGCCTTATGATTCTTCTAAAATTAAGGCTGCACTTGAGGTTTTAAAGTCATTGAGTAGGGTACAGTGCATTACACCCAAAGTTATATCTGCACATGGTACTCCTGCAGAAAATACTGAATGCCCTGGGGTATCCTGTGATGTTAACAATGGGAAACGCTTGGAAGATATTCCTGAAAGTCAACATCTCTCTGGGAATAGCAGTTCTAATGGCACAGGAGAGAAAGCAATAGTATTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGCAATCTTCGATTCAGTATAGAAGACTTGATGGAACGATGTCTGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTACCAGAGGTTTCGGTTATGATTATGTCTTTGAAGGCTGCGAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTGGATTTATGGTGGAACCCTACTACTGAAGATCAAGCAATTGATAGAGCACATCGAATTGGGCAGACCCGTCCTGTGACTGTTTTGCGTTTAACCGTGAAAGATACCGTAGAAGATCGTATTTTGGCTTTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGCCGTCAGAGTCGCCTTACAGTAGATGATTTAAAATACCTGTTCATGATGTGA 4008 0.4189 MADDDVNFSELFDGDDDDNMCYIDLTTVMQVLNEDDDPLQQSSPEDFSLQNGSSGESGVHDSFQLQNVCQMLEEEPHVSRLEVDSATDCSPFCSDVSDSGAKDSVHFSANPVLEREHENQGLPSQACSSTEKTGLSKFETSSFGMETSFPEAYSNNVSVCQDYLNKSMWKSGNERQFKHVGEDVESEHASHSSIIENGDLNFEDCVEDAVRGAYGQQESDLCTSFQISDMEADDSLHASTSIDSALYQGSHFPSDLCGDYAYPNYHQGGTYDRSFANDPTLRFIPNGIGSKSWTNKEMMTNLKAENMEFCTDMAQISGGMHSVNTGGSSIHDSQFTLADSGYSSYFSGNSAFEDGVSVALSTYASHGDQSLCMKAEGDKLVTSYQNNFQNNDAQFNIGQEVKQLPDLFPSVKCKSYGSFPCEDSYTVITSDRANHYQDTINGTASKLQRNMVYLTVDQCLPHAHASIAVEQQFGCVKRGGTEMIQHNRIDSHHSKRTAENFRVEDTDVCIIEDNSHPVPTSQSEAVRNSLSIFQSSGYVGSQHYAVGSTRVKACDERNILQVALQDLSQPKSEISLPVGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPKLSACPNAQNGELETLNLDGEDDGLPQSSLLKKESDSCGDMSIRDPIKSKSLSLQTKGRPSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYSIVSMEVPKQPLADKEDEEKGIFEDSGVPNRKRKNPSNSSKSGKKRLDNALLEAAARPLAKVSWFRVVLDEAQSIKNHRTQVARACSGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYAPYDIYTSFCSMIKNQVSRNPTKGYKKIQAVLKTIMLRRTKGTFLDGEPIISLPPKFVELKKVEFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNTLWRSSVEMAKKLPQEKQVSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCSQCISEHLTGDDNQCPAANCKSRLSMSTVFAKAMLNGCMSNQGCDSSPGSSGSEVDESEPWSRSQPYDSSKIKAALEVLKSLSRVQCITPKVISAHGTPAENTECPGVSCDVNNGKRLEDIPESQHLSGNSSSNGTGEKAIVFSQWTRMLDLLEVCLKQSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3289 1335 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 514 1334 - -
Ahy13g3289 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1016 1074 IPR013083 -
Ahy13g3289 1335 ProSitePatterns Zinc finger RING-type signature. 1038 1047 IPR017907 -
Ahy13g3289 1335 SUPERFAMILY RING/U-box 1020 1073 - -
Ahy13g3289 1335 Gene3D - 680 770 IPR038718 -
Ahy13g3289 1335 Gene3D - 796 908 IPR038718 -
Ahy13g3289 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1334 IPR027417 -
Ahy13g3289 1335 Pfam Helicase conserved C-terminal domain 1176 1277 IPR001650 -
Ahy13g3289 1335 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 514 1334 - -
Ahy13g3289 1335 Pfam SNF2-related domain 605 984 IPR000330 GO:0005524|GO:0140658
Ahy13g3289 1335 ProSiteProfiles Zinc finger RING-type profile. 1023 1062 IPR001841 -
Ahy13g3289 1335 SMART helicmild6 1194 1277 IPR001650 -
Ahy13g3289 1335 Gene3D - 922 1334 IPR027417 -
Ahy13g3289 1335 CDD SF2_C_SNF 1180 1287 - -
Ahy13g3289 1335 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 869 IPR014001 -
Ahy13g3289 1335 MobiDBLite consensus disorder prediction 653 672 - -
Ahy13g3289 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 907 IPR027417 -
Ahy13g3289 1335 SMART ultradead3 581 897 IPR014001 -
Ahy13g3289 1335 Pfam Zinc finger, C3HC4 type (RING finger) 1023 1059 IPR018957 GO:0046872
Ahy13g3289 1335 Gene3D - 555 644 IPR038718 -
Ahy13g3289 1335 SMART ring_2 1023 1061 IPR001841 -
Ahy13g3289 1335 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1157 1330 IPR001650 -
Ahy13g3289 1335 MobiDBLite consensus disorder prediction 36 58 - -
Ahy13g3289 1335 MobiDBLite consensus disorder prediction 761 796 - -
Ahy13g3289 1335 MobiDBLite consensus disorder prediction 761 781 - -
Ahy13g3289 1335 CDD DEXDc_SHPRH-like 585 907 - -
Ahy13g3289 1335 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3289 Ahy-Chr13 129764402 129772813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3289 476 1334 RAD5 or RAD16-like Gene Family AT1G61140 60.606 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy13g3289 SNF2_N 6.80E-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3289 - - gmx:100802436 1743.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3289 13 129764402 129772813 Ahy13g3289 13 129764402 129772813 ECH
Ahy13g3289 13 129764402 129772813 Ahy3g3027 3 127217174 127225543 hybridization