Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3269 ATGAATGACCTATTCTCAAGTTCCTTCAAGAAATACACTGATGTGGCGCCGCAGAGCGACTACATGAACGATGTGGAGGCCGGAAAGGAAAGTATCAATCTGGACAAGTTCTTCGAAGATGTGGAGAATGTGAAGGAAGAGATGAGAACCATCGAGAAGCTGTACAGAAAGCTGCAAGAGGCGAATGAAGAGAGCAAGATTGTCCACAATGCTCAGACCATGAAGGATCTTCGCGCGAGAATGGACCAAGACGTGTCTCAGGTCCTGAAACGTGTGAAGATGATCAAGGGTAAGCTGGAGGCTCTAGAAAGGTCCAACGCAGAAAACAGAAAGCTTCCGGGGTGTGGTCCAGGGTCCTCAGCGGACAGGACAAGGTCTTCGGTTGTTAGTGGCTTGGGGAAGAAGTTAAAGGACTTGATGGATGACTTTCAAGGATTGAGGGCCAGGATGCAATCGGAGTACAAGGAGACAGTGGAGCGCAGGTATTTCACAATCACTGGGGAGAAGGCAGATGAAGACACCATTGAGAATTTGATCTCCAGCGGCGAGAGTGAGAGCTTCCTCCAGAAAGCAATTCAAGAACAGGGGAGGGGTCAGATTATGGACACCATTTCTGAAATTCAGGAGAGACATGATGCTGTCAAGGAGATAGAGAAGAACCTTCTTGAGCTTCACCAGGTGTTCCTCGACATGGCAGCTTTGGTGGAGTCTCAGGGCCAACAGCTCAACAACATAGAGAGCCATGTTGCTCATGCCAGTTCCTTCGTTCGCCGCGGCACCGAGCAGCTTCAGGAAGCTAGAGATATTCAAAAGGACTCCAGGAAGTGGTACTGCTATGCCGTCCTCCTCGTCATTGTCCTCATCATTGTCCTCCTCTTCCCTATACTGATAAACATAGCGCCTCACTTGTTTTGA 915 0.4918 MNDLFSSSFKKYTDVAPQSDYMNDVEAGKESINLDKFFEDVENVKEEMRTIEKLYRKLQEANEESKIVHNAQTMKDLRARMDQDVSQVLKRVKMIKGKLEALERSNAENRKLPGCGPGSSADRTRSSVVSGLGKKLKDLMDDFQGLRARMQSEYKETVERRYFTITGEKADEDTIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARDIQKDSRKWYCYAVLLVIVLIIVLLFPILINIAPHLF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3269 304 CDD SynN 34 191 IPR006011 GO:0016020
Ahy13g3269 304 Gene3D - 34 161 - -
Ahy13g3269 304 SMART tSNARE_6 199 266 IPR000727 -
Ahy13g3269 304 MobiDBLite consensus disorder prediction 107 127 - -
Ahy13g3269 304 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Ahy13g3269 304 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy13g3269 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Ahy13g3269 304 CDD SNARE_syntaxin1-like 203 265 - -
Ahy13g3269 304 PANTHER SYNTAXIN-124-RELATED 14 296 - -
Ahy13g3269 304 PANTHER SYNTAXIN 14 296 IPR045242 -
Ahy13g3269 304 Gene3D - 194 298 - -
Ahy13g3269 304 Coils Coil 34 71 - -
Ahy13g3269 304 SMART SynN_4 29 155 IPR006011 GO:0016020
Ahy13g3269 304 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Ahy13g3269 304 Pfam SNARE domain 241 292 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3269 Ahy-Chr13 129533805 129535397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3269 1 304 SNARE and Associated Proteins AT1G61290 76.645 3.21e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3269 K08486 - gmx:100818999 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3269 13 129533805 129535397 Ahy3g3001 3 126876370 126877830 hybridization
Ahy13g3269 13 129533805 129535397 Ahy20g0525 20 5424429 5425522 PCT
Ahy13g3269 13 129533805 129535397 Ahy10g0341 10 3110924 3112113 PCT
Ahy20g0525 20 5424429 5425522 Ahy13g3269 13 129533805 129535397 PCT
Ahy10g0341 10 3110924 3112113 Ahy13g3269 13 129533805 129535397 PCT