Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3224 ATGGGGATGTATCACAGGAAGCTTTTTTCAAGGCAGGATGCCTGCAGTGACCAGTGTTACAATGAAGACCCTTCTTGTTTGGGAAGATCGGATTGCAACGACTGCATCAAATGCTCGTCCACCCTGAATCCTCCACCACCACACAGCAACCGTCACATCCCCACCTTCTTGATCATCATAGTTCCCGTCGTATGCGCCGCCCTCTTTGCCCTCTTCTGCTACGTCATCTACGCCAAGTTCTACTCCCCCAGGAGCAGGTCAAGGACCACGTTCTTCTCGTTATCGTTTCCGTTACGTCTACAACAAGGACAGGAACGGAACGGCGACGACTTTCTGGATGACGGAGAAGGCGCCACTACGGTGGACCACCCTATCTGGTACATCCGTACAGCGGGTCTGAACCAAACCATCATCGACGCCATCACGGTTCTGAAGTACAAGAAAGGCGAAGGGTTGGTTGAAGGAACAGAGTGCTCTGTTTGCTTGAGCGACTTTGAAGAAGACGACACCCTCAGGCTGTTACCCAAATGCAACCACGCTTTCCATCTCCCTTGTATTGACACGTGGCTCGCATCTCACACCAACTGTCCCATGTGTAGGGCTCCCATTGTTACCAACCCCAGAGCTTCTAGGCTTCCCTCCATGGACCACCCTGCTACTCTTGTTGTTGATTCCACTCCTCTCCAGAGTCGTGGAGACGCTGCAACAACGGAAGAAAACAGTGGCAGTGAGATTGTGGAGAGGAATGGATCAGAGGAACAAGTTGAAGCTGATGTTGAAGTTGCAACAAGGAACGTGCAGCCAAGGAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCCAAGATCAGCGCTGCTCTTGTTGCTGCTACTACTACTGTTGCATCAGTGCAAGAATCTAAAGGGAATTCAAAGAGGATTGCTGCTTCTGCAAAAGGTAGTAGTTCATCATCTTCTTCTTCTTCTTCGAGTGCGCCTAGTTCAATGAAGAGGTCACGCTCCTTCAGTGGGAAACACGTGCTATCCTGGTACGGTCGCAACCACAACCAGAACCAGAAGAAGACGAATCCTCCAGTCAGAAGCTTTTGA 1086 0.5055 MGMYHRKLFSRQDACSDQCYNEDPSCLGRSDCNDCIKCSSTLNPPPPHSNRHIPTFLIIIVPVVCAALFALFCYVIYAKFYSPRSRSRTTFFSLSFPLRLQQGQERNGDDFLDDGEGATTVDHPIWYIRTAGLNQTIIDAITVLKYKKGEGLVEGTECSVCLSDFEEDDTLRLLPKCNHAFHLPCIDTWLASHTNCPMCRAPIVTNPRASRLPSMDHPATLVVDSTPLQSRGDAATTEENSGSEIVERNGSEEQVEADVEVATRNVQPRRSVSLDSSSAAKISAALVAATTTVASVQESKGNSKRIAASAKGSSSSSSSSSSSAPSSMKRSRSFSGKHVLSWYGRNHNQNQKKTNPPVRSF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3224 361 MobiDBLite consensus disorder prediction 298 334 - -
Ahy13g3224 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 208 IPR013083 -
Ahy13g3224 361 MobiDBLite consensus disorder prediction 342 361 - -
Ahy13g3224 361 MobiDBLite consensus disorder prediction 224 244 - -
Ahy13g3224 361 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Ahy13g3224 361 MobiDBLite consensus disorder prediction 298 361 - -
Ahy13g3224 361 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 344 IPR044675 -
Ahy13g3224 361 SUPERFAMILY RING/U-box 152 206 - -
Ahy13g3224 361 MobiDBLite consensus disorder prediction 224 255 - -
Ahy13g3224 361 SMART ring_2 158 199 IPR001841 -
Ahy13g3224 361 CDD RING-H2_PA-TM-RING 157 200 - -
Ahy13g3224 361 Pfam Ring finger domain 157 200 IPR001841 -
Ahy13g3224 361 PANTHER RING-H2 FINGER PROTEIN ATL54 12 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3224 Ahy-Chr13 129030818 129032259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3224 104 337 C3H Transcription Factor Family AT4G33565 41.350 4.09e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3224 - - aip:107631077 664.455