Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3172 ATGACAGGAATATCAGAAGTGTTGTATCAGCTGTACGCTAAAGCAATAGTGCTATTAGCATACATGCTCATAGAACTTGTCCTTCTTATTCAGTACCTCAAATCAGACAAACGCAGCAGCACCACAATCACCACCACTCAGTATCTCAGATTCATTGAAGAGAAGAACCCCACAATTCTCTACACCAAGAGCATGATGCAGCAACTGGATCCTGTTGAATGCAGAGTGTGCTTGAATGAGTTCCATGAAGGTGATCAATTGAGGAACCTCAAGTGTCACCACGCTTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAATCTTTTGCTACTTGCCCTCTTTGCAGGATCAAGCTGTTACCTGATTATGTTGTTGCAAAGTATCAGAATAATAACCATAATCATCATCAGAACAATATTACTGAGGTAGAGTATTATGAAGGCAATGATGATCAGCTTATTCTTTTTTTATCTTCACTGAGGGGTAGTAATCGTACATTGCATAGATATCTCTGA 516 0.3973 MTGISEVLYQLYAKAIVLLAYMLIELVLLIQYLKSDKRSSTTITTTQYLRFIEEKNPTILYTKSMMQQLDPVECRVCLNEFHEGDQLRNLKCHHAFHRDCLDKWLQQSFATCPLCRIKLLPDYVVAKYQNNNHNHHQNNITEVEYYEGNDDQLILFLSSLRGSNRTLHRYL* 172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3172 171 SUPERFAMILY RING/U-box 64 123 - -
Ahy13g3172 171 Pfam Ring finger domain 73 116 IPR001841 -
Ahy13g3172 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 122 IPR013083 -
Ahy13g3172 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 164 - -
Ahy13g3172 171 SMART ring_2 74 115 IPR001841 -
Ahy13g3172 171 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Ahy13g3172 171 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
Ahy13g3172 171 PANTHER - 1 164 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy13g3172 Ahy-Chr13 127202836 127203351 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3172 16 116 C3H Transcription Factor Family AT5G45290 41.509 1.29e-18 80.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3172 K16282 - gmx:102669811 202.216
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3172 13 127202836 127203351 Ahy13g3172 13 127202836 127203351 ECH
Ahy13g3172 13 127202836 127203351 Ahy3g2844 3 123840868 123841383 hybridization
Ahy13g3172 13 127202836 127203351 Ahy20g1235 20 23579068 23580084 PCT
Ahy13g3172 13 127202836 127203351 Ahy10g0909 10 15442764 15443728 PCT