Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3169 ATGACGGATCAAATAGTTTCTTCTCCTCTAATTCCTCCTTCATCTATCACCCACTCTTCCGCCATCGACCTTGAAGCCGGTTCCTCCGAACAAATCCAATGCCGGATTTGTCTCGAAACAGATGGCAGAGATTTCATTGCTCCTTGCAAATGCAAAGGTACATCAAAATATGTACATCGAGAGTGTTTGGATCACTGGCGTGCGGTTAAGGAAGGGTTTGCATTTGCTCATTGCACTACTTGCAAGGCACCTTATCATTTGCGTGTTCATGGTGCTGCAGATAGGAAATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTTCTGGCAGTTCAGCTTGTCATTGCTTCATTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTACTGGCTTCGTCTTGTTTGGGGTTTTGATAGTGAGCCAAGCTTTTACTACATATGTGGAGCCCTCTTGTTTTTTGTATTGCTTGGCCTATCAGGATGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGACTTGGCACAGCCTTGTCGAGAAATCTGTCTTTGTTGCTGCCATCCTGGAGTCTGCGCAGACTGCCATTTACCGGGGACACTTTGCATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGCGGAACGATGGCAACTGAATGTGGAAGTTGCATGGGAGGTGCTGGAGAAGCAGGGCTGCCATTACTATTCATAATGGCTTTGATTTTTCTCGGACTCTTTACTCTAATTGGGATATTTTACAGTGTATTAGTGGCTACCATGATAGGACAACGAATATGGCAGCGTCATTATCATATACTTGCAAAAAGGATGCTTACAAAGGAGTATGTCGTTGAGGATATCGACGGAGAGGTGTCACGGTCTGACTGGTCTCCTCCATCTCTCCCACTGGAACATGTTCAACAGCTGAAATCACTGGGTCTTTTATGA 972 0.4414 MTDQIVSSPLIPPSSITHSSAIDLEAGSSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYWLRLVWGFDSEPSFYYICGALLFFVLLGLSGCFITCYDRRVRNDLAQPCREICLCCCHPGVCADCHLPGTLCMWTDCTACFESCGTMATECGSCMGGAGEAGLPLLFIMALIFLGLFTLIGIFYSVLVATMIGQRIWQRHYHILAKRMLTKEYVVEDIDGEVSRSDWSPPSLPLEHVQQLKSLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3169 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Ahy13g3169 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 94 IPR013083 -
Ahy13g3169 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Ahy13g3169 323 SUPERFAMILY RING/U-box 28 86 - -
Ahy13g3169 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Ahy13g3169 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Ahy13g3169 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Ahy13g3169 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3169 Ahy-Chr13 127067297 127071344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3169 1 323 C3H Transcription Factor Family AT2G22120 81.173 0.0 543
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3169 13 127067297 127071344 Ahy13g3169 13 127067297 127071344 ECH
Ahy13g3169 13 127067297 127071344 Ahy3g2842 3 123748627 123752583 hybridization
Ahy13g3169 13 127067297 127071344 Ahy20g1237 20 23626096 23630302 PCT
Ahy13g3169 13 127067297 127071344 Ahy10g0911 10 15573708 15577835 PCT