Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3161 ATGGCAGGAGGGAATAATAAGAGGAATCAAACAAGCCCAGTGGGAAGTCCAACATCAGGGAACATCTCAGATAGTTCTTCATCGAAGGAACAACAAGACAGGTTCCTCCCAATTGCAAACGTCAGCAGGATCATGAAGAAGGCGCTGCCGCCGAATGCCAAGATCTCGAAGGAGGCGAAGGAAACTGTTCAGGAGTGTGTGTCTGAGTTCATAAGCTTCATAACTGGTGAAGCTTCCGACAAGTGCCAGAGGGAGAAGAGGAAGACCATCAATGGTGATGATCTTCTTTGGGCCATGACTACGCTTGGTTTTGAGAACTATGTGTTAGGATTTGGTTGA 339 0.472 MAGGNNKRNQTSPVGSPTSGNISDSSSSKEQQDRFLPIANVSRIMKKALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVLGFG* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3161 112 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Ahy13g3161 112 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Ahy13g3161 112 PRINTS CCAAT-binding transcription factor subunit A signature 101 112 - -
Ahy13g3161 112 SUPERFAMILY Histone-fold 32 108 IPR009072 GO:0046982
Ahy13g3161 112 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 10 109 - -
Ahy13g3161 112 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ahy13g3161 112 Gene3D Histone, subunit A 22 110 IPR009072 GO:0046982
Ahy13g3161 112 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy13g3161 112 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Ahy13g3161 112 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3161 Ahy-Chr13 126843935 126844551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3161 18 108 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.516 4.78e-53 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy13g3161 CBFD_NFYB_HMF 7.20E-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3161 K08065 - gmx:100810059 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3161 13 126843935 126844551 Ahy13g3161 13 126843935 126844551 ECH
Ahy13g3161 13 126843935 126844551 Ahy3g2833 3 123555103 123556099 hybridization