Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3104 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCCGCGTCGACGTTTGGGCTTTCTTTGACGCTGCAATCGACGTCGCTTCCGCCGATAACGCCGATGAATTGAAGCGCCGCCGGGACGGAATCGTCGAGCGCCTTTACGCCGCTACTGCCACGCCTCCCCGGTGTCTGAATTGCGAAGCAAATGCCGTCGAAGCACACAATCAGCAAAACAAATCGTCAGAGGACGAGGATATGGATCCTTTTGGAGGCTTATTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCACCAACTTGAAGATCCTCACCAGTCGGAAGATTCGTTGGCGGAGTTGCTACAGAATCTGGCGGACATGGATATTACATTCCAGGCTTTAGAGGAAACTGACATTGGGAGGAACGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGCTGAAGGCACCTGGAGAACCTGCTACTGCTAGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACGAAATGGGCATCATCAGATTCCTGGTTTTGCATGCTCGCCAAATTCAGAGAATGGCAATTTTGAGTCTTCCGAAACAGAACCAAAACCAAAACCAATTCCTCGCAAAGAAGCTCTGCCAAAACCAGCTCAAAAATCACCATCACCGTTACCATCGGTTCCCACTCCTCCTCCTCCTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACCTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGTTTTCTTTGGAAAGAACAAAGGCGGCATGGGTTCTCAGGGAAGGAAATGGTGA 957 0.4796 MDLDDFRSILDTARVDVWAFFDAAIDVASADNADELKRRRDGIVERLYAATATPPRCLNCEANAVEAHNQQNKSSEDEDMDPFGGLFDDEQKKILEIKHQLEDPHQSEDSLAELLQNLADMDITFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATASDDEDSPQQRNQRNGHHQIPGFACSPNSENGNFESSETEPKPKPIPRKEALPKPAQKSPSPLPSVPTPPPPQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNVFFGKNKGGMGSQGRKW* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3104 318 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 173 IPR035441 -
Ahy13g3104 318 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 175 IPR035441 -
Ahy13g3104 318 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 318 IPR044790 -
Ahy13g3104 318 MobiDBLite consensus disorder prediction 299 318 - -
Ahy13g3104 318 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Ahy13g3104 318 Coils Coil 111 131 - -
Ahy13g3104 318 SMART TFS2_5 94 165 IPR003617 GO:0005634
Ahy13g3104 318 MobiDBLite consensus disorder prediction 190 215 - -
Ahy13g3104 318 CDD TFIIS_I 91 164 - -
Ahy13g3104 318 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 318 - -
Ahy13g3104 318 Coils Coil 260 287 - -
Ahy13g3104 318 MobiDBLite consensus disorder prediction 234 251 - -
Ahy13g3104 318 MobiDBLite consensus disorder prediction 173 263 - -
Ahy13g3104 318 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3104 Ahy-Chr13 125007420 125009790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy13g3104 Med26 5.00E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3104 - - aip:107630962 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3104 13 125007420 125009790 Ahy13g3104 13 125007420 125009790 ECH
Ahy13g3104 13 125007420 125009790 Ahy20g1960 20 109924524 109928061 ECH
Ahy13g3104 13 125007420 125009790 Ahy3g2779 3 121843616 121846051 hybridization
Ahy13g3104 13 125007420 125009790 Ahy20g1960 20 109924524 109928061 PCT
Ahy13g3104 13 125007420 125009790 Ahy10g1527 10 88760382 88763848 PCT
Ahy20g1960 20 109924524 109928061 Ahy13g3104 13 125007420 125009790 PCT
Ahy10g1527 10 88760382 88763848 Ahy13g3104 13 125007420 125009790 PCT