Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3096 ATGTATGCTTCAACTTCCTTCACTTCACACATAGTTCATGACCTTGTCATACAATCTCACTCAAGAAGGTTACTCATGCTCCCAAATCCACTTGCTCATCACGATTCCTCACCACCTCCAACAAACAACAACTCAACCCATTTATACCTCGGAAACAGTTCTTTCGATGCCAACGTTGTCATGGTCCTCTCCGTCCTCCTATGCGCACTTATTTGCTCCTTAGGATTGAACGCAGTCATAAGGTGTGCTTTGAGGTGTTCCGATTTGGTAATCAACGACTCATCATCGTCATCAAATCCTAGCCCTTCATCATCATCATCAAGTAGTCGATTGGCCAACACGGGAATCAAGAAGAAAGCTTTGAAGACTTTTCCGATAATCACATACGAGTCAACTGAGTTAAACAAAGTACCTGGTTTGGACACCGAGTGTGTGATATGCCTCTCGGACTTCACAAATGGTGAAAAGTTGCGTATTCTGCCAAAATGTAACCATGGCTTCCATGTTAGCTGCATTGACAAGTGGCTCACTTCTCATTCATCTTGTCCCAAGTGCAGACACTGCCTAATTCACACGTGCCAAAAGATTGTTGGCGGAACTACTCATCCTCCTCCTCCTCTACCTCAAACCATTATAAGCATTGAACCACTGGACCCAGAAACTATGGTGCGTAATTATACATAG 684 0.4386 MYASTSFTSHIVHDLVIQSHSRRLLMLPNPLAHHDSSPPPTNNNSTHLYLGNSSFDANVVMVLSVLLCALICSLGLNAVIRCALRCSDLVINDSSSSSNPSPSSSSSSSRLANTGIKKKALKTFPIITYESTELNKVPGLDTECVICLSDFTNGEKLRILPKCNHGFHVSCIDKWLTSHSSCPKCRHCLIHTCQKIVGGTTHPPPPLPQTIISIEPLDPETMVRNYT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3096 227 PANTHER RING-H2 FINGER PROTEIN ATL78 1 226 IPR044602 GO:0016567|GO:0016740
Ahy13g3096 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 190 IPR013083 -
Ahy13g3096 227 SMART ring_2 144 185 IPR001841 -
Ahy13g3096 227 Pfam Ring finger domain 143 186 IPR001841 -
Ahy13g3096 227 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Ahy13g3096 227 CDD RING-H2_PA-TM-RING 143 186 - -
Ahy13g3096 227 SUPERFAMILY RING/U-box 137 191 - -
Ahy13g3096 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3096 Ahy-Chr13 124822159 124823171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3096 23 190 C3H Transcription Factor Family AT3G10910 45.238 1.84e-45 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3096 K19040 - gmx:100780127 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3096 13 124822159 124823171 Ahy3g2763 3 121498564 121502833 hybridization
Ahy13g3096 13 124822159 124823171 Ahy20g1975 20 111061401 111062461 PCT
Ahy13g3096 13 124822159 124823171 Ahy10g1538 10 89465686 89466709 PCT
Ahy20g1975 20 111061401 111062461 Ahy13g3096 13 124822159 124823171 PCT
Ahy10g1538 10 89465686 89466709 Ahy13g3096 13 124822159 124823171 PCT