Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3090 ATGGTGAGAGACGATCTATACATAACGGTTCCGAGCTTCTTCCGGTGCCCTATATCACTGGACGTCATGAAGTCCCCCGTCAGCCTCTGCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTCCTACATACCAAGGAATTCGTTCCCAACCGCACCCTGCAGAGGCTCATCCAGATCTGGTCCGAATCCCTCCGCAACTCTCCTGACTCACCCGACCCTGCCGACTCTCTCCTTTCCAAAGACCAGGTCCTAGCCGCCTTCGCCCACTTGCAGTCCCGCCCCCTCGACCGCCTCGAATCGCTCGCCAAAATCCTCAGTTTCGCGCGAGATTCTGAGGAAAACCGCAAGTATCTTGCGAGAATAGAAGCGTTCCTGCCTGCGCTGGTCGGTTTCCTCCTCAATGTTGACGACGATTTTCAGTTCCTTGAGCAGGTTGTTATGGCGTTGAATCTGATTCTGGATAAAATCGAAGACCGCGAGGCCTTGAAAACCTTGATGCTCAAGAACCAGAGCAGCAGCTGCTTGGATTCTCTGCTCCTCGTTCTGCAACGAGGAAGCACCGATTCGAAGATCTCGTCGGCTAGGGTTTTGCAATCACTCGCCATGGATACGGAATCAAAGCTCTTGATAGGGGAAAAGAAAGGCCTAATTTCCCAAGTGCTCAGGCTAACCGCGCCGGACAAAGATCCAGCGGTGATCGAGAACGCCTTGTCGTGCCTGGTGGCAATCTCCACGGCAAAACGGAATAAGTTTATGCTGGTGCATCTTGGAGCAGTGAAAGCGTTCTCGAAGCTTCTAACGGAATCGAGCGTGAGCGCCTCGGTTGCGGAGAAGGTGCTGAAGCTTCTGGAAACGGTGTCGTCAACGAAGGAAGGGAGAACGGAGATATGCGAGGACAGCACGTGCGTGGCGGCGATACTGAGCAAGGTTCTGAAGGTTTCGAGCGCGGCGACGGAACACGCCGTGACGACTCTGTGGAGCGTGTGCTATCTGTTTCGTGACCAGAAGGCGCAAGAAGCGGTTACGAAGGCTAACGGCTTAACGAAGATTCTGTTACTGATGCAGAGCAATTGTTCGCCTCCTGTGCGCCAAATGTCCGCAGATTTGCTTAAGATTTTTAGAGTAAATTCCAAATCGTGTCTTTCTTGTTATGACACCAAAACTACCCATATCATGCCCTTTTGA 1233 0.5345 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHTKEFVPNRTLQRLIQIWSESLRNSPDSPDPADSLLSKDQVLAAFAHLQSRPLDRLESLAKILSFARDSEENRKYLARIEAFLPALVGFLLNVDDDFQFLEQVVMALNLILDKIEDREALKTLMLKNQSSSCLDSLLLVLQRGSTDSKISSARVLQSLAMDTESKLLIGEKKGLISQVLRLTAPDKDPAVIENALSCLVAISTAKRNKFMLVHLGAVKAFSKLLTESSVSASVAEKVLKLLETVSSTKEGRTEICEDSTCVAAILSKVLKVSSAATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPPVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3090 410 Gene3D - 82 405 IPR011989 -
Ahy13g3090 410 SUPERFAMILY RING/U-box 5 79 - -
Ahy13g3090 410 SUPERFAMILY ARM repeat 164 396 IPR016024 -
Ahy13g3090 410 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Ahy13g3090 410 CDD RING-Ubox_PUB 14 56 IPR045210 -
Ahy13g3090 410 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Ahy13g3090 410 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Ahy13g3090 410 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 410 - -
Ahy13g3090 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
Ahy13g3090 410 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3090 Ahy-Chr13 124676432 124678310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3090 1 410 U-box Gene Family AT5G09800 53.237 3.79e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3090 - - gmx:100799627 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3090 13 124676432 124678310 Ahy13g3090 13 124676432 124678310 ECH
Ahy13g3090 13 124676432 124678310 Ahy3g2756 3 121303340 121305230 hybridization