Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3083 ATGTCCACAACCAAATCTAAACCCATATTCTTGTTCTTCACAACCCCAACTTGTGCCATGGCCTCCCTCATTTCCCTTCTCTCCCTCTCCCTCCTACTCTTCTTCACCCTCTCCTCCGCCACGCGCCACCACCACAACAACAACAACCACAATTCCCACACTCCCTCCACCCCCACACCCACCCCCATTGCCGCCGTCTCACCCGCAATCCAACAAGCCTGCAAGGGCACGCGATTTCCCCCGCAATGCGAGTCCACTCTCTCCCAATCCACCACTCTCCCGCCCAACCCAACCTCACTCCAGCTCCTCCAATCTGCCATCTCCGCCTCCTCCAACAACCTTAAAACCGCCCAGTCCATGGTCAAGTCCATCCTCGACACCTCTTCCGACAGCCGCAACCGCACCGTCGCCGCCACCACATGCCTCGAGGAACTCGCCAACTCCGACCACCGCCTATCCCAAGCCGACGATGCCCTGACACGTGACAAGACCAAGGACGCCCGCGCCTGGCTTACCGCCGCCCTTGTCTACCAGTACGACTGCTGGAATGGCCTCAAGTACGCCAACGACACATCCAAGGTCGGCGAAACGATGTCGTTTATCGACAACCTCACCCAACTCTCAAGCAACGCGCTCTCCATGGCCTTCTCCTACGACGCCTACGGGAAAGACCTGGCGACGTGGAAACCTCCGGCGACAGAGCGCGACGGGTTCTGGGAAGCCACAGGATCTTCGGGCGGAGGTTCCGTACCAGGGTTCCCGACGGGCCTGAAGCCGGACGCTACGGTGTGCAAGGATGGCAGCAATGGGTGTTACAAGACGGTACAGGAAGCGGTTAACGCGGCGCCGAGTAACGGTAACGGCGGAAAGAGGTTCGTGATATACATTAAGGAAGGGGTATATGAAGAGACCGTTAGAGTTCCGTTAGAGAAGACGAATTTGGTGTTCTTGGGCGACGGCATGGGGAAAACGGTAATTACTGGCTCTGCTAACGCTGGCCAGCCCGGCATGACCACTTACAACTCTGCTACAGTCGCGGTTCTTGGGGATGGGTTCATGGCGAAGGATCTCACAATACAGAACACTGCTGGGCCTGATGCTCACCAAGCAGTGGCCTTCAGACTAGACAGCGATCTCTCAATCATTGAGAACTGTGAATTCATAGGCAACCAAGACACACTCTATGCTCATTCCCTGCGCCAGTTCTACAAATCGTGCCGGATTATCGGCAACGTAGATTTCATCTTCGGCAACTCGGCCGCCATCTTCCAAGACAGCCAAGTCTTGGTGGCTCCAAGGCAAGTGAAGCCGGAGAAGGGGGAGAACAACGCTGTGACGGCGCACGGCAGGACAGATCCTGCACAGTCAACGGGGTTTGTGTTCCAGAACTGCCTGATCAATGGCACCGAGGAATACATGAAGTTGTATCATAGCAATCCCAAAGTGCATAAGAACTACTTGGGTAGGCCTTGGAAAGAGTACTCTAGAACAGTTTTCCTGAATTGCTTCTTGGAAGCATTGATCACACCCCAGGGTTGGATGCCATGGACTGGTGACTTTGCTCTCAAGACACTCTACTATGGAGAATTTGAGAATAAGGGACCTGGTTCTGATTTGTCTCAGAGGGTATCCTGGAGTAGCAAGGTCCCCTCGGAGCATGTTTTTGCTTATTCAGTGCAGAATTTCATCCAAGGAGATGAGTATATTCAATAA 1713 0.5441 MSTTKSKPIFLFFTTPTCAMASLISLLSLSLLLFFTLSSATRHHHNNNNHNSHTPSTPTPTPIAAVSPAIQQACKGTRFPPQCESTLSQSTTLPPNPTSLQLLQSAISASSNNLKTAQSMVKSILDTSSDSRNRTVAATTCLEELANSDHRLSQADDALTRDKTKDARAWLTAALVYQYDCWNGLKYANDTSKVGETMSFIDNLTQLSSNALSMAFSYDAYGKDLATWKPPATERDGFWEATGSSGGGSVPGFPTGLKPDATVCKDGSNGCYKTVQEAVNAAPSNGNGGKRFVIYIKEGVYEETVRVPLEKTNLVFLGDGMGKTVITGSANAGQPGMTTYNSATVAVLGDGFMAKDLTIQNTAGPDAHQAVAFRLDSDLSIIENCEFIGNQDTLYAHSLRQFYKSCRIIGNVDFIFGNSAAIFQDSQVLVAPRQVKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYHSNPKVHKNYLGRPWKEYSRTVFLNCFLEALITPQGWMPWTGDFALKTLYYGEFENKGPGSDLSQRVSWSSKVPSEHVFAYSVQNFIQGDEYIQ* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3083 570 SMART PMEI_2 65 214 IPR006501 GO:0004857
Ahy13g3083 570 Gene3D - 257 570 IPR012334 -
Ahy13g3083 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 213 IPR006501 GO:0004857
Ahy13g3083 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 217 IPR035513 -
Ahy13g3083 570 SUPERFAMILY Pectin lyase-like 256 569 IPR011050 -
Ahy13g3083 570 CDD PMEI-like_3 73 214 - -
Ahy13g3083 570 PANTHER PECTINESTERASE 16 569 - -
Ahy13g3083 570 PANTHER PECTINESTERASE 16 569 - -
Ahy13g3083 570 Pfam Pectinesterase 260 566 IPR000070 GO:0030599|GO:0042545
Ahy13g3083 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 214 IPR035513 -
Ahy13g3083 570 Pfam Plant invertase/pectin methylesterase inhibitor 69 214 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3083 Ahy-Chr13 123937030 123940139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3083 62 568 Carbohydrate Esterase AT5G09760 69.141 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3083 - - adu:107480269 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3083 13 123937030 123940139 Ahy13g3083 13 123937030 123940139 ECH
Ahy13g3083 13 123937030 123940139 Ahy3g2751 3 120975514 120978464 hybridization
Ahy13g3083 13 123937030 123940139 Ahy20g1990 20 112960495 112962970 PCT
Ahy13g3083 13 123937030 123940139 Ahy10g1553 10 90441698 90444194 PCT
Ahy20g1990 20 112960495 112962970 Ahy13g3083 13 123937030 123940139 PCT
Ahy10g1553 10 90441698 90444194 Ahy13g3083 13 123937030 123940139 PCT