Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3080 ATGATGGATACCACAAACCTGCAGCAGAATAATAATGCTACTGTCTTCACTGCTGCTACTTGGACAGAAGTTGATCATAATCACATCATTCACCAAATCCCTAACATCATGGCTTCTGGGGTTTTCCCAAACTACCATCACCTTCTTCAAATTCATCATCATCCATCAACAACCACTACTGCACTGCCCTCTTCTTCTTCATCGGGGTTCCTTGGTGACATACTTGGAGTAGTGCACCTAGAACACCAAGAGCAAGAACAAGATCATGATCACGATCATGAAGATGAAGAGGCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGATCCCGCCACCATTAGGAAGCCAAAGAGGCGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCGGCGCGCCACCGCAGGGAGAGGATCAGCGAGAAGATTCGGATCCTGCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACAGCTTCCATGCTGGATGAAGCAATTCGATATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCCACTACTCCTCATCAACCGCCACAATGCAATTATGTTGGTCTTCCTAATAATTCTAACAGTGCCTTCTCTTTAGGCCCTTCTACTTCTGATTGGCCTTTTGCACCCACCACCACGCCCTCCGCCGTGCCTGCCTCATTCGGATTCAATGCCGGAGGAGGTCATCATGCCCCCTCCAGCTTTAATCATCATGAGGTAATTAATGAATGA 786 0.4835 MMDTTNLQQNNNATVFTAATWTEVDHNHIIHQIPNIMASGVFPNYHHLLQIHHHPSTTTTALPSSSSSGFLGDILGVVHLEHQEQEQDHDHDHEDEEAEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPHQPPQCNYVGLPNNSNSAFSLGPSTSDWPFAPTTTPSAVPASFGFNAGGGHHAPSSFNHHEVINE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3080 261 Pfam Helix-loop-helix DNA-binding domain 145 184 IPR011598 GO:0046983
Ahy13g3080 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Ahy13g3080 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 243 IPR045843 GO:0003700|GO:0006355
Ahy13g3080 261 Gene3D - 138 200 IPR036638 GO:0046983
Ahy13g3080 261 SMART finulus 141 190 IPR011598 GO:0046983
Ahy13g3080 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 243 - -
Ahy13g3080 261 CDD bHLH_AtIND_like 136 193 - -
Ahy13g3080 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3080 Ahy-Chr13 123691340 123692654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3080 102 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.899 1.71e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy13g3080 HLH 1.30E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3080 - - aprc:113856609 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3080 13 123691340 123692654 Ahy13g3080 13 123691340 123692654 ECH
Ahy13g3080 13 123691340 123692654 Ahy3g2749 3 120862979 120863780 hybridization
Ahy13g3080 13 123691340 123692654 Ahy20g1992 20 113094525 113095369 PCT
Ahy13g3080 13 123691340 123692654 Ahy10g1555 10 90864413 90865334 PCT
Ahy20g1992 20 113094525 113095369 Ahy13g3080 13 123691340 123692654 PCT
Ahy10g1555 10 90864413 90865334 Ahy13g3080 13 123691340 123692654 PCT