Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3072 ATGGAGAAAGGAAAATTAAGTCCAGGATTTCATTTCAATCCCACTGATGTAGAGCTTCTAAAGTATTTTCTGAAGAGGAAAGTGACCGGCAAAAAGCTACCCAATGTAATTGCTGAGATTAACGTTTATCAGTATTGTCCCTGGGACCTCCGAGGTAAGTCACATCTGAAAAGTGGGGATTTGGAGTGGTACTTCTTCTGTGCAAGAGGAAAAAAATATGGAATTGGGTCGAAGACGAACCGTGCTATAAAGAATGGGTACTGGAAAGCTACTGGTATGGACAAAGCTATTGTTCAGCATGATAAGCAAACTGTGGGGATGATGAAAATCCTTGTTTTCCACACTGGTAAAGCGCCTCATGGGACCCCAACCGATTGGGTTATGCATGAGTATAGGCTTCAAGATAAAGACCTTACTGACAAAGGAATTGCTCAGGACTCCTATGTTATCTGTAAGGTGTTCCGAAAGGAGGGTCATGGCCCACGGACACGGAGCGGTGCACAATATAGGAAACCATTTAATGAAGAAGATTGGGATGATGATGATCATCACGTTGTTGAGGAGGGGGGAACCCCTTCAACTGCTTTGGTTGCGCCGGTTTCCATTCAGTCTACGACATTCGATGGCTCTTCTTACATGAAGCCAACTTCTGTTTCATGTGAGTCGGGACCTGTGGCTACTTCTCCTGTCCCATCAACTCCTTCTTCAGATGCAAGCATTCACACGGTTAATAATGTTAATAATTCAACAGTGACTGATCTATCCAAAGACGAAAAAACAGTACCTGAGGAAAATATTGCTGCCGGTGACCTCTTGAGTAAGTTTTTTGAGGGTTTGGAAGACCTTGAGTCTGAATACACTCCAAATGGAGTGGGCTTGGATGACTTTTCCCCACATGGAATAAACTATGATGACTTGAGGCACTTGGACTTGATTGATCTCAATTTCCTATAG 954 0.434 MEKGKLSPGFHFNPTDVELLKYFLKRKVTGKKLPNVIAEINVYQYCPWDLRGKSHLKSGDLEWYFFCARGKKYGIGSKTNRAIKNGYWKATGMDKAIVQHDKQTVGMMKILVFHTGKAPHGTPTDWVMHEYRLQDKDLTDKGIAQDSYVICKVFRKEGHGPRTRSGAQYRKPFNEEDWDDDDHHVVEEGGTPSTALVAPVSIQSTTFDGSSYMKPTSVSCESGPVATSPVPSTPSSDASIHTVNNVNNSTVTDLSKDEKTVPEENIAAGDLLSKFFEGLEDLESEYTPNGVGLDDFSPHGINYDDLRHLDLIDLNFL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3072 317 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Ahy13g3072 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 225 - -
Ahy13g3072 317 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Ahy13g3072 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 233 301 - -
Ahy13g3072 317 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Ahy13g3072 317 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Ahy13g3072 317 PANTHER PLANT NAC DOMAIN PROTEIN 1 225 - -
Ahy13g3072 317 PANTHER PLANT NAC DOMAIN PROTEIN 233 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3072 Ahy-Chr13 123467001 123472897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3072 1 259 NAC Transcription Factor Family AT5G09330 41.844 1.24e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy13g3072 NAM 1.60E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3072 - - adu:107480257 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3072 13 123467001 123472897 Ahy13g3072 13 123467001 123472897 ECH
Ahy13g3072 13 123467001 123472897 Ahy3g2741 3 120647141 120650096 hybridization
Ahy13g3072 13 123467001 123472897 Ahy20g2013 20 114022081 114025101 PCT
Ahy13g3072 13 123467001 123472897 Ahy10g1575 10 91687327 91690405 PCT
Ahy20g2013 20 114022081 114025101 Ahy13g3072 13 123467001 123472897 PCT
Ahy10g1575 10 91687327 91690405 Ahy13g3072 13 123467001 123472897 PCT