Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3043 ATGGAAGATGAAAGCCATAGCAATTTGCCAAATGGGTTCACCACAGAAAGCCCTGAAAGCCCTTGCTTAAAGAACAACAATAACCACAACAACAACAACAATAGTAGCAGCAATAACAACAACAAAGAACAAGATCGCTTTCTCCCCATAGCCAATGTTGGTAGAATCATGAAAAAAGTGATCCCGGCCAACGGAAAAATTTCCAAGGACGCCAAAGAGACCGTTCAAGAATGCGTATCGGAGTTCATTAGCTTTGTCACCGGAGAAGCCTCCGACAAATGCCAAAGAGAAAAAAGAAAGACCATCAATGGTGATGATATCATTTGGGCCATCACAACCCTAGGGTTTGAGGATTATGTGGAACCATTAAAATCCTATCTCCAAAAATATAGAGACATAGAAGGAGAAAAGCTTAATGTTCCAAAGCAACAGCGTTCTGAACAAAGGCTACACCATCAGCATCAGCATCAGCATCAACAACACCATCACCATAACCAAGATGAAACTAATCAAACACTAAATAGTGTATATACTTCTGCAAATCTCATTTCTCATCAACCTCCTTATGTAGCCACGGATCAACCATTTTCATTGCCGTTTTCACCAAATTCAATTCAGAAACAGTTACGACCTCAAGATCAGATTGATTCCGTGGGGCATTGGTACGAGTAA 672 0.4062 MEDESHSNLPNGFTTESPESPCLKNNNNHNNNNNSSSNNNNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKLNVPKQQRSEQRLHHQHQHQHQQHHHHNQDETNQTLNSVYTSANLISHQPPYVATDQPFSLPFSPNSIQKQLRPQDQIDSVGHWYE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3043 223 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ahy13g3043 223 SUPERFAMILY Histone-fold 44 164 IPR009072 GO:0046982
Ahy13g3043 223 Gene3D Histone, subunit A 33 175 IPR009072 GO:0046982
Ahy13g3043 223 MobiDBLite consensus disorder prediction 141 169 - -
Ahy13g3043 223 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Ahy13g3043 223 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Ahy13g3043 223 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Ahy13g3043 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 212 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy13g3043 223 MobiDBLite consensus disorder prediction 202 223 - -
Ahy13g3043 223 MobiDBLite consensus disorder prediction 7 44 - -
Ahy13g3043 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Ahy13g3043 223 MobiDBLite consensus disorder prediction 1 44 - -
Ahy13g3043 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3043 Ahy-Chr13 122470745 122471777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3043 13 221 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.187 2.32e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy13g3043 CBFD_NFYB_HMF 3.30E-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3043 K08065 - gmx:100778216 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3043 13 122470745 122471777 Ahy3g2713 3 119821722 119822565 hybridization