Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3036 ATGGAAAGGAGCGTTAGCAGAACCCACAAGAAGCCAATGAGCCTTAACGACTCTCATTATCGCTTCCTTCAAGACCTCTCCGCTCATCCTAAATCCAGACCCTCTCCATCTGCCTCCGAGGAGAAGGAGCACGATGAAACTCCCATTCAATCAGATGATCATACTATTCCCCGATTCTCCGCTATCACCGACTTCGATTCTCCTATCGGGCCTGACTTGGAGGAGAAACCCTCTTCCATCGAGGTCAAACTTCCGCGCTCTTCTCCGAAGGAAATTTCACAGGCTTCATTGGGGACAACGCGTAATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATCGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGAGAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGAAGGATCCGAGTAACGACCCGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGGATGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGGTTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAAACGAGAGAATATTTTGGAACTAATATAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGGGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGATTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGAGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGAATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAACAAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACAGTGGATGACACTTTTAAAGCACATATAGAATTCCTGAGAAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGTTATATCGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTTTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAATTGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGATCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3057 0.4298 MERSVSRTHKKPMSLNDSHYRFLQDLSAHPKSRPSPSASEEKEHDETPIQSDDHTIPRFSAITDFDSPIGPDLEEKPSSIEVKLPRSSPKEISQASLGTTRNDEKKTKLKLQGRRRLCKVATSDDRDKEAAVDESRFDELIELDSPLPAPKNVIQIDESVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQKDPSNDPSQGAKYAVGDAGIEYVEDDDSPAKDAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTNIKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGGYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDGQHTVDDTFKAHIEFLRSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTSYIGTSVSSSSNDRMADGAEFAFKPKDLDRSKKGFSPSSDGKLTESEIKDRIKRISQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3036 1018 Coils Coil 978 998 - -
Ahy13g3036 1018 PANTHER SNF2/RAD54 FAMILY MEMBER 287 900 - -
Ahy13g3036 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 861 IPR027417 -
Ahy13g3036 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 545 IPR027417 -
Ahy13g3036 1018 SMART ultradead3 303 506 IPR014001 -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 248 268 - -
Ahy13g3036 1018 PANTHER OS04G0692700 PROTEIN 287 900 - -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 1 16 - -
Ahy13g3036 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 670 829 IPR001650 -
Ahy13g3036 1018 Pfam Helicase conserved C-terminal domain 667 779 IPR001650 -
Ahy13g3036 1018 CDD SF2_C_SNF 662 790 - -
Ahy13g3036 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 320 495 IPR014001 -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 1 110 - -
Ahy13g3036 1018 Pfam SNF2-related domain 323 615 IPR000330 GO:0005524|GO:0140658
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 215 236 - -
Ahy13g3036 1018 Gene3D - 293 566 IPR038718 -
Ahy13g3036 1018 Gene3D - 567 865 IPR027417 -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 903 920 - -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 217 231 - -
Ahy13g3036 1018 Coils Coil 169 189 - -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 889 920 - -
Ahy13g3036 1018 SMART helicmild6 696 779 IPR001650 -
Ahy13g3036 1018 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3036 Ahy-Chr13 122211583 122217968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3036 308 833 RAD5 or RAD16-like Gene Family AT1G02670 24.826 5.93e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy13g3036 SNF2_N 1.30E-48 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3036 13 122211583 122217968 Ahy3g2705 3 119628691 119635235 hybridization