Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3022 ATGGGCAAAGAAAATGGGTCAGCAACGCCAAAGGAAGAAGGCAGTGATGACGGTTACTCAAGTCTTGAGACTGTTGAATTAGAATCTCAGTCACGACCTAGCCTAGAGAAGGACACAGGTTTGCCAAGTTGTCGCGTGTGCCAATGTGCCGAATCTGATAAAAGGGGAGATGCTGCCCTAGAATTTTTGGGCATCACTCCGGTGATCAAAGCTTGTAAATGGAATGGGGAAGATGGGGAGGTAAGGTCAGAAGGCCAGGGAATTCAGAAAAATATGTCTTTTAACAAAAATGTTGGAAGCAAATCTGGGATGGTGGAATTTGTAGGCCCTAATGGGGAGGTTTTCATGTGTAGAAGTGATGTGGAGATTGGTTTGTCTCACCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGACCTTGCTTTAGTACACTATGCTTGTGCACTCAAGTGGTTTATTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGCCAATAATATCAGAATCTCTGACTTTAACAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGGTCCTCATGTCCATGCGAATAATAATACTGGCGTTGATCCTGACGCTGTGGCTGCTATCCGGAGGCAACGGCTAAGTGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCCGACACAGTTTCACAGGTTGCTTCTGAGCAGCCTTCAAATTTTGTTACTGAAGATGCTGGCCCTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCACAGGGATCCTGCTTGCTACTGGCCTGCTTACAATCACCCTTGCGTGGCTGATAGCTCCTCGAGTTGGAAAGAAAACAGCCAAAAGTGGTCTTCACATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTTTTCCGCTTTTTTGTGCTTACCAGAATCAAGTACGGACCTGCACGTTATTGGGCAATCTTATTCGTTTTCTGGTTTCTTGTGTTTGCCATATGGGCTTCACGGACACATGGTGCCCATACAACGTGA 1098 0.449 MGKENGSATPKEEGSDDGYSSLETVELESQSRPSLEKDTGLPSCRVCQCAESDKRGDAALEFLGITPVIKACKWNGEDGEVRSEGQGIQKNMSFNKNVGSKSGMVEFVGPNGEVFMCRSDVEIGLSHQDALIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPGPHVHANNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVASEQPSNFVTEDAGPAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFAIWASRTHGAHTT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3022 365 MobiDBLite consensus disorder prediction 22 37 - -
Ahy13g3022 365 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Ahy13g3022 365 MobiDBLite consensus disorder prediction 1 41 - -
Ahy13g3022 365 SUPERFAMILY RING/U-box 128 168 - -
Ahy13g3022 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 175 IPR013083 -
Ahy13g3022 365 SMART ringv_2 117 166 IPR011016 GO:0008270
Ahy13g3022 365 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 364 - -
Ahy13g3022 365 Pfam RING-variant domain 131 165 IPR011016 GO:0008270
Ahy13g3022 365 PANTHER ZINC FINGER, RING-CH-TYPE 16 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3022 Ahy-Chr13 121829108 121832540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3022 1 355 C3H Transcription Factor Family AT5G08750 64.011 2.33e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3022 - - gmx:100805323 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3022 13 121829108 121832540 Ahy3g2685 3 119183865 119187004 hybridization