Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2976 ATGGCAAGCACCTACAACTACCTGAAGGATGTGGATGCATCTAATGACAATTTGATCTATAGGATCAAGCTGAGGGCATTGAAAATATGGTCACTGTCCCCCGTCCAGCAGAAATACGTAAGACCAACTTTGGAGTTTGTGGCAATGGACCAGCTGGGAGATCGCATCCAATGTTCCATTAGGAATCCACAGCGGAGGCTGTTTGAGGATGAGTTGGTGGAGGGAAAAATATATACCATCTGCAACTTTTCAGTTGCCGTTAATGATAAAAAATACAAGGCCACTAATCATGCTAGCAGGATTTACTTTAAGAGGGATACTCAACTTCGACTAGTTGATGATCCATCCTTTCCTGAGAATGTCTTCCGATTTGTTCCTAACGAAGTCATACTCAACCACACCAACACTCAGTCACATCTTATAGATGTCATTGGTCTTCTGACGGCCAAGGGTGACATAATTGAATTTACTAAAAATGGAAAGAAGAGCAACTACATCGTTCTGGAACTTGACGACATGCAGGGAAAAGGAAAAATTCGCTGTACACTTTGGGAGGAGTTCGCAAGTAAGTTGGTCAAACATATTCAAGAGCAGCCGACGTCTGAGTATATCCTAATTGTACAATTCGCTAAGTTCAATCTATTTAAAGGTACAATGGGGATATCAAACACTACCTATAATTCAAATCTTTACATCAATGCAGACTTTCAGGCGGTAAAGGATTTTTGTAAAAGTGTCATTATGTCCAGTGTTCCACCTCCAAATCAACTCTCCCAAATAGCGACTGAACCTGTATACTCCATTGAGGAAGATCTCATTGACAAGTCAATATATAAATCCATTTCTAAGCTCAAGGAATGCATTGAGAATGGGAGCTTTGTTACAATTGGAACTGTTGTTGCAATCGATCCTAAGAACGGTTGGTGA 927 0.4067 MASTYNYLKDVDASNDNLIYRIKLRALKIWSLSPVQQKYVRPTLEFVAMDQLGDRIQCSIRNPQRRLFEDELVEGKIYTICNFSVAVNDKKYKATNHASRIYFKRDTQLRLVDDPSFPENVFRFVPNEVILNHTNTQSHLIDVIGLLTAKGDIIEFTKNGKKSNYIVLELDDMQGKGKIRCTLWEEFASKLVKHIQEQPTSEYILIVQFAKFNLFKGTMGISNTTYNSNLYINADFQAVKDFCKSVIMSSVPPPNQLSQIATEPVYSIEEDLIDKSIYKSISKLKECIENGSFVTIGTVVAIDPKNGW* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2976 308 CDD RPA1_DBD_A_like 21 107 - -
Ahy13g2976 308 Gene3D - 116 250 IPR012340 -
Ahy13g2976 308 Gene3D - 8 114 IPR012340 -
Ahy13g2976 308 CDD RPA1_DBD_B_like 142 242 - -
Ahy13g2976 308 PANTHER REPLICATION FACTOR A 1, RFA1 30 302 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy13g2976 308 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 30 302 - -
Ahy13g2976 308 Pfam Domain of unknown function DUF223 47 136 IPR003871 -
Ahy13g2976 308 SUPERFAMILY Nucleic acid-binding proteins 8 116 IPR012340 -
Ahy13g2976 308 SUPERFAMILY Nucleic acid-binding proteins 136 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2976 Ahy-Chr13 120004430 120008119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2976 44 236 Core DNA Replication Machinery Family AT2G06510 27.273 9.15e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2976 - - aip:110270293 618.616